Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   SR36_RS16545 Genome accession   NZ_CP010816
Coordinates   3314886..3315518 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain BL21 (TaKaRa)     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3309886..3320518
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SR36_RS16515 (SR36_16515) yheS 3310055..3311968 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  SR36_RS16520 (SR36_16520) yheT 3311968..3312990 (+) 1023 WP_000057356.1 hydrolase -
  SR36_RS16525 (SR36_16525) yheU 3312984..3313202 (+) 219 WP_000907085.1 YheU family protein -
  SR36_RS16530 (SR36_16530) prkB 3313256..3314125 (+) 870 WP_001274680.1 phosphoribulokinase -
  SR36_RS16535 (SR36_16535) yhfA 3314180..3314584 (-) 405 WP_001148908.1 OsmC family protein -
  SR36_RS16545 (SR36_16545) crp 3314886..3315518 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  SR36_RS16550 (SR36_16550) yhfK 3315569..3317659 (+) 2091 WP_012775971.1 YccS/YhfK family putative transporter -
  SR36_RS16555 (SR36_16555) argD 3317726..3318946 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  SR36_RS16560 (SR36_16560) pabA 3319032..3319595 (-) 564 WP_000601847.1 aminodeoxychorismate synthase component 2 -
  SR36_RS16565 (SR36_16565) fic 3319627..3320229 (-) 603 WP_000502522.1 putative adenosine monophosphate-protein transferase Fic -
  SR36_RS16570 (SR36_16570) yhfG 3320219..3320386 (-) 168 WP_000736861.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=124616 SR36_RS16545 WP_000242755.1 3314886..3315518(+) (crp) [Escherichia coli strain BL21 (TaKaRa)]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=124616 SR36_RS16545 WP_000242755.1 3314886..3315518(+) (crp) [Escherichia coli strain BL21 (TaKaRa)]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTTTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAATCTGGCAAAACAACCAGACGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATTGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment