Detailed information    

insolico Bioinformatically predicted

Overview

Name   recG   Type   Machinery gene
Locus tag   VAB027_RS00960 Genome accession   NZ_CP010812
Coordinates   193341..195419 (-) Length   692 a.a.
NCBI ID   WP_046125996.1    Uniprot ID   -
Organism   Vibrio cholerae strain 10432-62     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 188341..200419
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VAB027_RS00945 (VAB027_180) ompR 189464..190186 (+) 723 WP_000230023.1 two-component system response regulator OmpR -
  VAB027_RS00950 (VAB027_181) envZ 190255..191571 (+) 1317 WP_001222687.1 two-component system sensor histidine kinase EnvZ -
  VAB027_RS00955 (VAB027_182) - 191596..192996 (-) 1401 WP_046125995.1 uracil-xanthine permease family protein -
  VAB027_RS00960 (VAB027_183) recG 193341..195419 (-) 2079 WP_046125996.1 ATP-dependent DNA helicase RecG Machinery gene
  VAB027_RS00965 (VAB027_184) spoT 195537..197654 (-) 2118 WP_000280455.1 bifunctional GTP diphosphokinase/guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase -
  VAB027_RS00970 (VAB027_185) rpoZ 197686..197958 (-) 273 WP_000135052.1 DNA-directed RNA polymerase subunit omega -
  VAB027_RS00975 (VAB027_186) gmk 198066..198689 (-) 624 WP_000515793.1 guanylate kinase -
  VAB027_RS00980 (VAB027_187) - 199057..199728 (+) 672 WP_001015358.1 7-cyano-7-deazaguanine/7-aminomethyl-7- deazaguanine transporter -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 76919.07 Da        Isoelectric Point: 7.5643

>NTDB_id=124473 VAB027_RS00960 WP_046125996.1 193341..195419(-) (recG) [Vibrio cholerae strain 10432-62]
MSQLLSAVPLCELSGVGAKVAEKLEKVGLHTVQDLLFHLPLRYEDRTRVYPIVQLHHGLWAAVQGKVMAVDTLFGKRKML
TVKISDGNGTLTLRFFNFTAAMKNNFAEGKFVHAYGEIKRGNQGLEIIHPDYKFFAPAQTPDVEPNLTPVYPTTEGLRQL
TLRNLTDQALALLEKSAVQELLPSGLYDQQMTLAQALKIIHRPSADIDLRLFEQGRHPAQVRLIMEELLAQNLSMLAIRS
QGQQDVALPLAPVHQPKQQLLAQLPFSPTKAQQRVVAEIEADLEKPHPMMRLVQGDVGSGKTLVAALAAVRAIEHGYQVA
LMAPTELLAEQHSLNFAQWLEPMGIQVGWLAGKLKGKARETELARIASGEVKMVVGTHALFQEQVSFDHLALVIIDEQHR
FGVHQRLELREKGAKQGAYPHQLIMTATPIPRTLAMTAYADLETSVIDELPPGRTPIQTVAIPDTKRDEIVERIRHACLN
EGKQAYWVCTLIDESEVLEAQAAAETAEELQRKLPEVKIGLVHGRMKPAEKQAVMQAFKNNELHLLVATTVIEVGVDVPN
ASLMIIENPERLGLAQLHQLRGRVGRGTVASHCVLLFHAPLSKTAQKRLGVLRESNDGFVIAQRDLEIRGPGELLGTKQT
GLADFKIADLVRDQQLVPQVQRIARHIHERYPQNAQAIIDRWLGERDIYAKA

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=124473 VAB027_RS00960 WP_046125996.1 193341..195419(-) (recG) [Vibrio cholerae strain 10432-62]
ATGTCACAACTCCTCTCAGCCGTTCCTCTTTGTGAACTCTCCGGTGTCGGGGCCAAAGTCGCCGAAAAACTGGAGAAAGT
CGGTTTGCACACCGTGCAGGATCTGCTGTTTCATCTTCCGCTGCGTTATGAAGATCGCACTCGCGTTTATCCCATAGTGC
AACTGCACCACGGTTTATGGGCCGCGGTACAAGGCAAAGTGATGGCAGTGGATACCCTGTTTGGCAAACGCAAAATGCTC
ACCGTGAAAATCAGTGATGGCAACGGCACGCTGACGCTGCGCTTTTTTAACTTCACCGCGGCGATGAAAAACAACTTTGC
GGAAGGCAAGTTTGTGCATGCCTATGGGGAGATCAAACGGGGTAATCAAGGCTTAGAGATCATCCATCCTGACTACAAAT
TCTTTGCCCCTGCACAAACGCCCGATGTTGAACCAAACCTGACTCCGGTTTACCCAACTACCGAAGGCTTACGCCAACTC
ACCCTGCGTAATTTGACCGACCAAGCGTTGGCGCTACTGGAAAAATCTGCGGTGCAGGAGTTACTGCCATCCGGGCTTTA
CGATCAGCAGATGACCTTAGCCCAAGCGCTGAAAATCATTCATCGCCCATCGGCGGATATCGATTTGCGCCTGTTTGAAC
AAGGGCGACATCCGGCGCAAGTTCGGCTGATCATGGAAGAACTGCTAGCGCAGAATCTCTCTATGCTCGCGATTCGCAGT
CAAGGCCAGCAAGATGTGGCCTTACCACTGGCACCCGTCCACCAACCCAAACAACAACTCTTGGCACAATTGCCCTTTTC
TCCGACTAAGGCGCAGCAACGTGTGGTTGCCGAAATCGAAGCGGATTTAGAAAAACCGCATCCTATGATGCGCTTAGTCC
AAGGCGATGTCGGCTCAGGCAAAACCTTAGTCGCAGCGCTTGCGGCAGTGCGGGCGATTGAGCATGGCTATCAAGTCGCC
TTGATGGCTCCTACCGAGCTACTGGCCGAGCAGCACTCGCTCAATTTTGCGCAGTGGCTAGAGCCGATGGGCATTCAAGT
GGGGTGGCTCGCGGGTAAACTCAAAGGCAAAGCGCGGGAAACGGAGCTGGCACGCATCGCCAGTGGCGAAGTGAAAATGG
TGGTTGGCACCCATGCTCTGTTTCAAGAGCAAGTGTCGTTTGACCATCTAGCCTTGGTCATTATTGATGAGCAGCATCGC
TTCGGGGTGCATCAGCGCTTAGAGCTACGCGAGAAAGGCGCAAAACAAGGCGCGTATCCGCATCAGCTCATCATGACTGC
TACTCCGATCCCGCGTACATTAGCGATGACGGCTTATGCCGATTTGGAAACCTCAGTGATTGATGAGTTACCCCCCGGGC
GTACTCCGATTCAAACCGTAGCGATTCCGGATACCAAACGCGATGAGATTGTCGAGCGCATTCGCCACGCCTGCCTCAAC
GAAGGCAAGCAAGCGTATTGGGTGTGTACTTTGATTGATGAATCCGAAGTGCTGGAAGCGCAAGCGGCCGCAGAAACGGC
GGAGGAACTGCAACGCAAACTGCCCGAAGTCAAAATCGGCTTAGTGCATGGCCGGATGAAACCCGCCGAGAAGCAAGCGG
TAATGCAAGCGTTTAAAAACAATGAGCTGCATCTGCTCGTCGCCACTACAGTGATTGAAGTGGGCGTGGATGTGCCCAAT
GCCAGCTTGATGATCATTGAAAACCCCGAGCGTTTGGGGCTAGCTCAACTTCACCAGCTACGCGGCCGTGTTGGGCGTGG
TACCGTAGCCAGCCATTGTGTGCTGCTGTTTCATGCACCACTCTCCAAAACCGCGCAAAAGCGTTTAGGCGTTTTGCGTG
AAAGCAACGATGGATTTGTCATCGCGCAGCGCGACTTGGAAATTCGTGGCCCCGGAGAGCTATTAGGCACCAAACAAACC
GGCTTAGCCGATTTCAAAATTGCTGATCTGGTACGCGATCAGCAATTGGTTCCGCAAGTGCAACGCATCGCGCGACATAT
CCATGAACGCTACCCACAAAATGCACAAGCCATCATCGACCGCTGGTTAGGCGAACGTGATATTTACGCCAAAGCTTAG

Domains

Predicted by InterProScan.

RecG wedge domain (RecG_wedge)

(15-171)

DEAD/DEAH box helicase (DEAD)

(271-432)

ATP-dependent DNA helicase RecG, domain 3, C-terminal (RecG_dom3_C)

(616-674)

Helicase conserved C-terminal domain (Helicase_C)

(479-587)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recG Neisseria meningitidis strain C311

50.595

97.11

0.491
  recG/mmsA Streptococcus pneumoniae R6

39.701

96.821

0.384
  recG/mmsA Streptococcus pneumoniae R36A

39.701

96.821

0.384
  recG Bacillus subtilis subsp. subtilis str. 168

39.324

94.075

0.37

Multiple sequence alignment