Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   CFF04554_RS05810 Genome accession   NZ_CP008808
Coordinates   1147133..1147507 (-) Length   124 a.a.
NCBI ID   WP_002849740.1    Uniprot ID   -
Organism   Campylobacter fetus subsp. fetus 04/554     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1142133..1152507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CFF04554_RS05785 (CFF04554_1146) tatB 1142796..1143251 (+) 456 WP_002849729.1 Sec-independent protein translocase protein TatB -
  CFF04554_RS05790 (CFF04554_1147) tatC 1143251..1144006 (+) 756 WP_002849731.1 twin-arginine translocase subunit TatC -
  CFF04554_RS05795 (CFF04554_1148) queA 1144003..1145022 (+) 1020 WP_038453726.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  CFF04554_RS05800 (CFF04554_1149) - 1145032..1146276 (+) 1245 WP_011732089.1 hypothetical protein -
  CFF04554_RS05805 (CFF04554_1150) - 1146262..1147125 (-) 864 WP_038453728.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CFF04554_RS05810 (CFF04554_1151) dprB 1147133..1147507 (-) 375 WP_002849740.1 Holliday junction resolvase RuvX Machinery gene
  CFF04554_RS05815 (CFF04554_1152) - 1147504..1148270 (-) 767 Protein_1158 DNA-processing protein DprA -
  CFF04554_RS05820 (CFF04554_1153) - 1148254..1149339 (-) 1086 WP_134864086.1 divergent polysaccharide deacetylase family protein -
  CFF04554_RS05825 (CFF04554_1154) ilvC 1149418..1150440 (-) 1023 WP_038453731.1 ketol-acid reductoisomerase -
  CFF04554_RS05830 (CFF04554_1155) - 1150587..1151399 (+) 813 WP_002849747.1 HDOD domain-containing protein -

Sequence

Protein


Download         Length: 124 a.a.        Molecular weight: 13694.09 Da        Isoelectric Point: 8.4803

>NTDB_id=124376 CFF04554_RS05810 WP_002849740.1 1147133..1147507(-) (dprB) [Campylobacter fetus subsp. fetus 04/554]
MIVAIDVGLKRIGVAVAVLPTVVLPSEPILRKNRNQAAKDTLKMLKEKNATKLVVGLPKGGSCEDEMERRIKHFISLVGF
DSEIIYVDEAYSSCEASELSKDSKDGRFDSIAAMVILKRYLNIL

Nucleotide


Download         Length: 375 bp        

>NTDB_id=124376 CFF04554_RS05810 WP_002849740.1 1147133..1147507(-) (dprB) [Campylobacter fetus subsp. fetus 04/554]
TTGATAGTAGCTATCGATGTCGGACTAAAAAGAATAGGAGTTGCGGTTGCGGTTTTACCGACTGTTGTACTTCCTAGCGA
ACCTATTTTACGTAAAAATCGCAATCAGGCGGCGAAAGATACTTTAAAAATGTTAAAAGAAAAAAATGCGACAAAACTAG
TAGTCGGCTTGCCAAAAGGCGGCAGCTGCGAGGATGAAATGGAAAGACGAATTAAGCATTTTATCTCTTTAGTCGGTTTT
GATTCAGAGATAATTTATGTTGATGAAGCTTATAGCAGCTGCGAAGCTAGCGAACTGTCAAAAGATTCTAAAGACGGTAG
ATTTGATAGCATTGCCGCTATGGTGATTTTAAAAAGATATCTAAATATTTTGTGA

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

50.388

100

0.524

Multiple sequence alignment