Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   SHYC_RS04305 Genome accession   NZ_CP008747
Coordinates   936895..937524 (+) Length   209 a.a.
NCBI ID   WP_039644795.1    Uniprot ID   A0A0A8HRY9
Organism   Staphylococcus hyicus strain ATCC 11249     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 931895..942524
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SHYC_RS04280 (SHYC_04375) - 932583..933608 (-) 1026 WP_039644788.1 aromatic acid exporter family protein -
  SHYC_RS04285 (SHYC_04380) map 933902..934660 (+) 759 WP_039644790.1 type I methionyl aminopeptidase -
  SHYC_RS04290 (SHYC_04385) - 934759..935145 (+) 387 WP_052257806.1 hypothetical protein -
  SHYC_RS04295 (SHYC_04390) liaF 935158..935865 (+) 708 WP_039644793.1 cell wall-active antibiotics response protein LiaF -
  SHYC_RS04300 (SHYC_04395) vraS 935862..936905 (+) 1044 WP_039644794.1 sensor histidine kinase Regulator
  SHYC_RS04305 (SHYC_04400) vraR 936895..937524 (+) 630 WP_039644795.1 response regulator transcription factor Regulator
  SHYC_RS04310 (SHYC_04405) - 937588..938157 (-) 570 WP_039644796.1 carbonic anhydrase -
  SHYC_RS04315 (SHYC_04410) - 938192..939463 (-) 1272 WP_039644798.1 YihY/virulence factor BrkB family protein -
  SHYC_RS04320 (SHYC_04415) - 939583..939858 (-) 276 WP_039644801.1 hypothetical protein -
  SHYC_RS04325 (SHYC_04420) - 939865..940323 (-) 459 WP_039644802.1 low molecular weight protein-tyrosine-phosphatase -
  SHYC_RS04330 (SHYC_04425) - 940456..940665 (+) 210 WP_039644804.1 DUF1128 family protein -
  SHYC_RS04335 (SHYC_04430) - 940682..941917 (+) 1236 WP_039644805.1 aminopeptidase -
  SHYC_RS04340 (SHYC_04435) - 941931..942449 (+) 519 WP_039644807.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23540.17 Da        Isoelectric Point: 5.1671

>NTDB_id=124024 SHYC_RS04305 WP_039644795.1 936895..937524(+) (vraR) [Staphylococcus hyicus strain ATCC 11249]
MTIKVLFVDDHEMVRIGISSYLSTQPDIEVVGEGASGKEAITKAHELQPDLILMDLVMTDMDGVEATTQIKKDLPRIKVV
MLTSYIEDKEVYRALDAGVDSYILKTTSASDIAEAIRKTHKGESVFEAEVLVKMRNRMRQRAELYELLTEREMEILLLIS
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHGLIE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=124024 SHYC_RS04305 WP_039644795.1 936895..937524(+) (vraR) [Staphylococcus hyicus strain ATCC 11249]
ATGACAATTAAAGTATTATTTGTGGATGATCATGAAATGGTAAGAATTGGAATATCAAGTTATCTTTCAACTCAACCAGA
TATTGAAGTAGTTGGTGAAGGAGCATCGGGTAAAGAAGCGATTACGAAGGCGCATGAACTTCAACCGGATTTGATTTTAA
TGGACTTAGTGATGACAGATATGGATGGTGTAGAAGCGACGACTCAAATTAAAAAAGATTTACCACGTATTAAAGTCGTG
ATGCTTACAAGCTATATTGAAGATAAAGAAGTTTACCGTGCGTTAGATGCAGGGGTGGACAGTTATATATTAAAAACAAC
AAGTGCAAGCGATATAGCCGAAGCAATTCGTAAAACACATAAAGGTGAATCTGTTTTTGAAGCTGAAGTGCTAGTGAAAA
TGCGAAATCGTATGAGACAAAGAGCAGAACTTTATGAATTATTAACGGAACGTGAAATGGAAATATTGTTACTGATTTCC
AAAGGTTACTCAAATCAGGAAATTGCGAGTGCCTCTCATATTACGATAAAGACGGTAAAAACGCATGTCAGTAACATTTT
AAGTAAGCTTGAAGTACAAGACCGTACACAAGCAGTTATTTATGCCTTTCAACATGGCTTAATTGAATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(147-202)

Response regulator receiver domain (Response_reg)

(5-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0A8HRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

90.431

100

0.904
  degU Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.383

Multiple sequence alignment