Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   C645_RS05710 Genome accession   NZ_CP008740
Coordinates   1111052..1111768 (+) Length   238 a.a.
NCBI ID   WP_005688385.1    Uniprot ID   -
Organism   Haemophilus influenzae 2019     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1106052..1116768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS05690 (C645_05770) - 1106992..1107522 (-) 531 WP_046067700.1 DsbE family thiol:disulfide interchange protein -
  C645_RS05695 (C645_05775) nrfE 1107522..1109429 (-) 1908 WP_046067701.1 heme lyase NrfEFG subunit NrfE -
  C645_RS05700 (C645_05780) suhB 1109537..1110340 (-) 804 WP_046067702.1 inositol-1-monophosphatase -
  C645_RS05705 (C645_05785) comN 1110540..1111052 (+) 513 WP_005688386.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C645_RS05710 (C645_05790) comO 1111052..1111768 (+) 717 WP_005688385.1 type II secretion system protein J Machinery gene
  C645_RS05715 (C645_05795) comP 1111783..1112466 (+) 684 WP_005655925.1 DUF2572 family protein Machinery gene
  C645_RS05720 (C645_05800) comQ 1112459..1112746 (+) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  C645_RS05725 (C645_05805) recC 1112792..1116172 (+) 3381 WP_046067703.1 exodeoxyribonuclease V subunit gamma -
  C645_RS05730 (C645_05810) nrdR 1116227..1116676 (+) 450 WP_005688384.1 transcriptional regulator NrdR -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26743.12 Da        Isoelectric Point: 9.5508

>NTDB_id=123969 C645_RS05710 WP_005688385.1 1111052..1111768(+) (comO) [Haemophilus influenzae 2019]
MMKVLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQHMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=123969 C645_RS05710 WP_005688385.1 1111052..1111768(+) (comO) [Haemophilus influenzae 2019]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTAGCATTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATTCAAACGCAAAATCAACACATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCACCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATCACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCGCTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

99.16

100

0.992

Multiple sequence alignment