Detailed information    

insolico Bioinformatically predicted

Overview

Name   comN   Type   Machinery gene
Locus tag   C645_RS05705 Genome accession   NZ_CP008740
Coordinates   1110540..1111052 (+) Length   170 a.a.
NCBI ID   WP_005688386.1    Uniprot ID   -
Organism   Haemophilus influenzae 2019     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1105540..1116052
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C645_RS05685 (C645_05765) nrfF 1105853..1106995 (-) 1143 WP_046067699.1 heme lyase NrfEFG subunit NrfF -
  C645_RS05690 (C645_05770) - 1106992..1107522 (-) 531 WP_046067700.1 DsbE family thiol:disulfide interchange protein -
  C645_RS05695 (C645_05775) nrfE 1107522..1109429 (-) 1908 WP_046067701.1 heme lyase NrfEFG subunit NrfE -
  C645_RS05700 (C645_05780) suhB 1109537..1110340 (-) 804 WP_046067702.1 inositol-1-monophosphatase -
  C645_RS05705 (C645_05785) comN 1110540..1111052 (+) 513 WP_005688386.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  C645_RS05710 (C645_05790) comO 1111052..1111768 (+) 717 WP_005688385.1 type II secretion system protein J Machinery gene
  C645_RS05715 (C645_05795) comP 1111783..1112466 (+) 684 WP_005655925.1 DUF2572 family protein Machinery gene
  C645_RS05720 (C645_05800) comQ 1112459..1112746 (+) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 170 a.a.        Molecular weight: 19867.12 Da        Isoelectric Point: 8.9743

>NTDB_id=123968 C645_RS05705 WP_005688386.1 1110540..1111052(+) (comN) [Haemophilus influenzae 2019]
MQKGMTLVELLIGLAIISIVLNFAVPLWKTDSPKTILAKEQHRLYLFLRQIQARAENSSEVWFLLINRNLATQQWCLTAQ
VKNNQTCDCLNPINCPKEVYAHFYYPYFSNKTMIQSHHIYPKEITRFDGIRNTIVTRCFILQAENERTLFLFFNVGSIRL
KTNQFDSACN

Nucleotide


Download         Length: 513 bp        

>NTDB_id=123968 C645_RS05705 WP_005688386.1 1110540..1111052(+) (comN) [Haemophilus influenzae 2019]
ATGCAGAAAGGTATGACATTAGTGGAATTATTGATTGGGTTAGCCATTATCAGTATTGTGCTGAATTTTGCAGTACCATT
ATGGAAAACCGATTCGCCTAAAACGATTTTAGCCAAAGAGCAACATCGCCTGTATTTATTTCTACGCCAAATTCAGGCTC
GGGCAGAAAATTCATCGGAAGTGTGGTTTTTACTTATCAATCGTAATCTTGCGACACAGCAATGGTGCTTAACGGCACAA
GTAAAAAATAACCAAACTTGTGATTGTTTAAATCCGATAAATTGCCCGAAAGAGGTTTATGCTCATTTTTACTACCCTTA
TTTTTCTAACAAAACGATGATTCAAAGTCATCATATTTATCCAAAAGAAATCACGAGATTTGATGGCATTCGTAATACTA
TCGTTACTCGTTGCTTTATTTTGCAAGCTGAAAATGAACGTACGTTATTTTTATTTTTTAATGTTGGCAGTATTCGTTTG
AAAACCAATCAATTTGATAGTGCTTGTAATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-21)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comN Haemophilus influenzae Rd KW20

98.235

100

0.982

Multiple sequence alignment