Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   SXYLSMQ121_RS12240 Genome accession   NZ_CP008724
Coordinates   2618368..2618889 (-) Length   173 a.a.
NCBI ID   WP_042363429.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain SMQ-121     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2613368..2623889
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SXYLSMQ121_RS12240 (SXYLSMQ121_2407) ssbA 2618368..2618889 (-) 522 WP_042363429.1 single-stranded DNA-binding protein Machinery gene
  SXYLSMQ121_RS12245 (SXYLSMQ121_2408) rpsF 2618908..2619213 (-) 306 WP_017723387.1 30S ribosomal protein S6 -
  SXYLSMQ121_RS12250 (SXYLSMQ121_2409) - 2619643..2620449 (+) 807 WP_042363430.1 GH25 family lysozyme -
  SXYLSMQ121_RS12255 (SXYLSMQ121_2410) ychF 2620599..2621696 (-) 1098 WP_042363431.1 redox-regulated ATPase YchF -
  SXYLSMQ121_RS12260 (SXYLSMQ121_2411) - 2621696..2621911 (-) 216 WP_029378813.1 DUF951 domain-containing protein -
  SXYLSMQ121_RS12265 (SXYLSMQ121_2412) - 2621933..2622817 (-) 885 WP_042363432.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19303.79 Da        Isoelectric Point: 4.9056

>NTDB_id=123897 SXYLSMQ121_RS12240 WP_042363429.1 2618368..2618889(-) (ssbA) [Staphylococcus xylosus strain SMQ-121]
MINRVVLVGRLTKDPEYRTTPSGVSVATFTLAVNRTFTNAQGEREADFINCVVFRKQADNVNNYLFKGSLAGVDGRIQSR
SYENQEGRRVFVTEVVCDSVQFLEPKNQNQRHGQEGNNNFQNFGGQQSGQNTSSYQNNNNNNNNNNTSNNNQSDNPFANA
NGPIDISDDDLPF

Nucleotide


Download         Length: 522 bp        

>NTDB_id=123897 SXYLSMQ121_RS12240 WP_042363429.1 2618368..2618889(-) (ssbA) [Staphylococcus xylosus strain SMQ-121]
ATGATAAATAGAGTTGTTTTAGTCGGTCGTTTAACGAAAGATCCAGAATATAGAACAACACCCTCAGGCGTGAGTGTTGC
GACTTTTACTCTAGCAGTAAACCGTACGTTTACAAATGCGCAAGGGGAACGCGAAGCAGATTTCATTAATTGTGTCGTTT
TTAGAAAACAAGCAGATAATGTAAATAACTACTTATTCAAAGGTAGTTTAGCTGGCGTTGACGGTCGCATTCAATCACGT
AGCTATGAAAACCAAGAAGGGCGTCGTGTTTTTGTAACTGAAGTAGTTTGTGATAGCGTTCAATTCCTTGAACCTAAAAA
TCAAAACCAACGTCATGGCCAAGAAGGGAATAATAATTTCCAAAACTTTGGCGGACAACAATCAGGACAAAATACATCGT
CATATCAAAATAACAATAACAATAATAACAACAACAATACATCAAATAATAATCAATCAGATAACCCATTTGCAAATGCA
AACGGACCTATTGATATTAGTGATGACGACTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

62.5

100

0.636
  ssb Latilactobacillus sakei subsp. sakei 23K

57.627

100

0.59
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.091

63.584

0.376

Multiple sequence alignment