Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   BSUB_RS17205 Genome accession   NZ_CP008698
Coordinates   3230842..3231486 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis subsp. subtilis str. AG1839     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3225842..3236486
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BSUB_RS17170 (BSUB_03380) mrpB 3227034..3227465 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  BSUB_RS17175 (BSUB_03381) mrpC 3227465..3227806 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  BSUB_RS17180 (BSUB_03382) mrpD 3227799..3229280 (+) 1482 WP_003244432.1 Na+/H+ antiporter subunit D -
  BSUB_RS17185 (BSUB_03383) mrpE 3229286..3229762 (+) 477 WP_003244015.1 Na+/H+ antiporter subunit E -
  BSUB_RS17190 (BSUB_03384) mrpF 3229762..3230046 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  BSUB_RS17195 (BSUB_03385) mnhG 3230030..3230404 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  BSUB_RS17200 (BSUB_03386) yuxO 3230443..3230823 (-) 381 WP_003228810.1 hotdog fold thioesterase -
  BSUB_RS17205 (BSUB_03387) comA 3230842..3231486 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  BSUB_RS17210 (BSUB_03388) comP 3231567..3233876 (-) 2310 WP_003242894.1 two-component system sensor histidine kinase ComP Regulator
  BSUB_RS17215 (BSUB_03389) comX 3233891..3234058 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  BSUB_RS17220 (BSUB_03390) comQ 3234046..3234945 (-) 900 WP_003243039.1 ComX modifying isoprenyl transferase ComQ Regulator
  BSUB_RS17225 (BSUB_03391) degQ 3235130..3235270 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  BSUB_RS22975 - 3235492..3235617 (+) 126 WP_003228793.1 hypothetical protein -
  BSUB_RS17230 (BSUB_03392) - 3235731..3236099 (+) 369 WP_003243784.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=123729 BSUB_RS17205 WP_003220716.1 3230842..3231486(-) (comA) [Bacillus subtilis subsp. subtilis str. AG1839]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=123729 BSUB_RS17205 WP_003220716.1 3230842..3231486(-) (comA) [Bacillus subtilis subsp. subtilis str. AG1839]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment