Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RC18_RS01370 Genome accession   NZ_CP010507
Coordinates   238867..240840 (-) Length   657 a.a.
NCBI ID   WP_002932502.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC078     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 233867..245840
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC18_RS01355 (RC18_01365) kdpB 234283..236328 (+) 2046 WP_002932498.1 potassium-transporting ATPase subunit KdpB -
  RC18_RS01360 (RC18_01370) kdpC 236330..236938 (+) 609 WP_002932499.1 potassium-transporting ATPase subunit KdpC -
  RC18_RS01365 (RC18_01375) kdpD 236941..238872 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC18_RS01370 (RC18_01380) uvrB 238867..240840 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB Machinery gene
  RC18_RS01375 (RC18_01385) - 240994..241224 (+) 231 WP_002852327.1 hypothetical protein -
  RC18_RS01380 (RC18_01390) - 241214..241456 (+) 243 WP_002854947.1 hypothetical protein -
  RC18_RS01385 (RC18_01395) Cj0683 241453..241890 (+) 438 WP_059110744.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC18_RS01390 (RC18_01400) priA 241872..243725 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC18_RS08750 - 243718..243861 (-) 144 Protein_276 sugar nucleotidyltransferase -
  RC18_RS08755 - 243863..243958 (+) 96 Protein_277 S24 family peptidase -
  RC18_RS01395 (RC18_01405) - 244017..244301 (+) 285 WP_052803034.1 hypothetical protein -
  RC18_RS01400 (RC18_01410) - 244298..244849 (-) 552 WP_002801718.1 ImmA/IrrE family metallo-endopeptidase -
  RC18_RS08835 - 244846..245019 (-) 174 WP_002801716.1 hypothetical protein -
  RC18_RS08760 - 245287..245454 (-) 168 Protein_281 DNA adenine methylase -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75983.56 Da        Isoelectric Point: 6.8371

>NTDB_id=123720 RC18_RS01370 WP_002932502.1 238867..240840(-) (uvrB) [Campylobacter jejuni strain CJ677CC078]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDTMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=123720 RC18_RS01370 WP_002932502.1 238867..240840(-) (uvrB) [Campylobacter jejuni strain CJ677CC078]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATGCCTACTCTTATCATGAGTCACAACAAAAGCCTTTGCGCTCAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCTACTAACGAAGACTTAGAACGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCGGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGATATTTATCCGGCTTATTATGAAGATGAAGTAGTAAGGCTTGAATTTT
TTGGCGATGAGCTTGATACTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGACTAAAACAAGCGATAAAAGATATCAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGTGTTGAAAATTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGGGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTTGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCCACACCTGCACCTTTAGAA
CTTGAACTGAGTAAAGAAAATATCTTTCATCAAATCATGCGTCCTACAGGACTGCTTGATCCTTTAATAGAATTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACCGTGC
TGACTAAAAAACTCGCTGAAGAACTTACAAGGTATTATTTAGAACTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTTGATTTGCCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACAACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACCACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATTACCCCAAC
TTCAGTCAAACGCCATATTGAAGAAAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCAGCTAGCGAAAGAGCTAAACTTGTCAAAGAATTAAGAAAACAAATGCTTGAAGCAGCAAAAGCACTTGAG
TTTGAAAAAGCTGCCGCAATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

UvrB interaction domain (UvrB_inter)

(158-246)

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae D39

50.926

98.63

0.502

Multiple sequence alignment