Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrB   Type   Machinery gene
Locus tag   RC34_RS01180 Genome accession   NZ_CP010500
Coordinates   202770..204743 (-) Length   657 a.a.
NCBI ID   WP_002932502.1    Uniprot ID   -
Organism   Campylobacter jejuni strain CJ677CC528     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 197770..209743
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RC34_RS01165 (RC34_01170) kdpB 198186..200231 (+) 2046 WP_002932498.1 potassium-transporting ATPase subunit KdpB -
  RC34_RS01170 (RC34_01175) kdpC 200233..200841 (+) 609 WP_002932499.1 potassium-transporting ATPase subunit KdpC -
  RC34_RS01175 (RC34_01180) kdpD 200844..202775 (+) 1932 WP_002932500.1 sensor histidine kinase KdpD -
  RC34_RS01180 (RC34_01185) uvrB 202770..204743 (-) 1974 WP_002932502.1 excinuclease ABC subunit UvrB Machinery gene
  RC34_RS01185 (RC34_01190) - 204897..205127 (+) 231 WP_002852327.1 hypothetical protein -
  RC34_RS01190 (RC34_01195) - 205117..205359 (+) 243 WP_002854947.1 hypothetical protein -
  RC34_RS01195 (RC34_01200) Cj0683 205356..205793 (+) 438 WP_002852324.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  RC34_RS01200 (RC34_01205) priA 205775..207628 (+) 1854 WP_002932503.1 primosomal protein N' -
  RC34_RS01205 (RC34_01210) - 207621..207887 (-) 267 Protein_237 CTP:phosphoglutamine cytidylyltransferase -
  RC34_RS08830 - 208099..208185 (+) 87 Protein_238 S24 family peptidase -
  RC34_RS01210 (RC34_01215) - 208244..208510 (+) 267 WP_059111035.1 hypothetical protein -
  RC34_RS08925 - 208488..208631 (+) 144 WP_194963482.1 hypothetical protein -
  RC34_RS01215 (RC34_01220) - 208628..209179 (-) 552 WP_002801718.1 ImmA/IrrE family metallo-endopeptidase -
  RC34_RS08930 - 209176..209349 (-) 174 WP_002801716.1 hypothetical protein -

Sequence

Protein


Download         Length: 657 a.a.        Molecular weight: 75983.56 Da        Isoelectric Point: 6.8371

>NTDB_id=123394 RC34_RS01180 WP_002932502.1 202770..204743(-) (uvrB) [Campylobacter jejuni strain CJ677CC528]
MLELTSEFKPSPDQQEAIKGIVKSIKKGNKYQTLLGVTGSGKTFTMANVIKELNMPTLIMSHNKSLCAQLYSEFKGFFSK
NHVEYFISYYDYYQPEAYIPRTDVFIEKDSSTNEDLERLRLSATASLLSYEDVVCIASVSANYGLGNPNEYIGMVLIFEL
GMQISQKELLKKLVDMGYKRNDNFFDRADFRVQGDIIDIYPAYYEDEVVRLEFFGDELDTMYHYNVLENKKGKDLKRFIL
YPTSQFSVGETRLKQAIKDIKAELNERLAYFEHENKLVEYQRLKQRVEFDLEMLTSTGMCKGVENYARHLTGLKEGDTPY
TLFDYFAIKDRKFLVIVDESHVSLPQFRGMFAGDRSRKQTLVDYGFRLPSALDNRPLMFDEFIHKNCQFLFVSATPAPLE
LELSKENIFHQIMRPTGLLDPLIELKDSDNQVEILFDEAKKVIQRNERVLVTVLTKKLAEELTRYYLELGIKVKYMHSDI
DAIERNEIIRGLRSGAFDMLIGINLLREGLDLPEVSLIAIMDADKEGFLRSTTSLIQTMGRAARNVNGKVLLFCKKITKS
MQEAMDTTNERRKLQMAYNKKYNITPTSVKRHIEESLKNEEDLGEIYRKGKKLEKMPASERAKLVKELRKQMLEAAKALE
FEKAAAIRDEINKLRDL

Nucleotide


Download         Length: 1974 bp        

>NTDB_id=123394 RC34_RS01180 WP_002932502.1 202770..204743(-) (uvrB) [Campylobacter jejuni strain CJ677CC528]
ATGTTAGAACTTACCAGCGAATTTAAACCCAGTCCCGATCAACAAGAAGCCATAAAAGGCATAGTAAAAAGTATAAAAAA
AGGCAACAAATATCAAACCTTACTAGGCGTTACAGGAAGTGGAAAAACCTTTACCATGGCAAATGTCATTAAAGAACTTA
ATATGCCTACTCTTATCATGAGTCACAACAAAAGCCTTTGCGCTCAACTTTATAGCGAATTTAAAGGCTTTTTTTCTAAA
AATCATGTGGAATATTTTATATCTTATTATGATTATTATCAACCTGAAGCCTATATCCCACGCACTGATGTTTTCATAGA
AAAAGACAGCTCTACTAACGAAGACTTAGAACGTTTAAGACTGAGTGCTACTGCTTCTCTTTTAAGTTATGAAGATGTAG
TTTGCATAGCTAGTGTTTCGGCAAATTATGGACTTGGTAATCCAAATGAATACATAGGCATGGTTTTAATCTTTGAACTA
GGTATGCAAATTTCACAAAAAGAACTTTTAAAAAAACTTGTAGATATGGGTTATAAAAGAAATGATAATTTTTTTGATCG
TGCAGATTTTAGAGTTCAAGGAGATATTATAGATATTTATCCGGCTTATTATGAAGATGAAGTAGTAAGGCTTGAATTTT
TTGGCGATGAGCTTGATACTATGTATCATTACAATGTTTTAGAAAATAAAAAAGGCAAAGATTTAAAACGCTTCATACTC
TATCCTACAAGCCAGTTTAGCGTGGGCGAAACAAGACTAAAACAAGCGATAAAAGATATCAAAGCAGAACTTAACGAACG
CCTTGCTTATTTTGAACATGAAAATAAACTCGTAGAATATCAACGCCTTAAACAAAGGGTTGAATTTGATCTTGAAATGC
TTACAAGCACAGGAATGTGTAAAGGTGTTGAAAATTATGCAAGGCATTTAACAGGACTTAAAGAAGGTGATACTCCTTAT
ACGCTTTTTGATTATTTTGCGATTAAAGATAGAAAATTTCTTGTTATAGTCGATGAAAGCCATGTATCTTTACCACAATT
TAGGGGTATGTTTGCAGGAGATAGAAGCAGAAAACAAACCTTGGTTGATTATGGTTTTCGTTTGCCTTCAGCCTTGGATA
ACCGTCCTTTAATGTTTGATGAATTTATCCATAAAAATTGTCAATTTCTTTTTGTTTCAGCCACACCTGCACCTTTAGAA
CTTGAACTGAGTAAAGAAAATATCTTTCATCAAATCATGCGTCCTACAGGACTGCTTGATCCTTTAATAGAATTAAAAGA
TAGTGATAATCAGGTTGAAATTTTATTTGATGAGGCTAAAAAAGTCATACAAAGAAACGAACGGGTTTTAGTAACCGTGC
TGACTAAAAAACTCGCTGAAGAACTTACAAGGTATTATTTAGAACTTGGTATAAAAGTCAAATACATGCACTCAGATATC
GATGCTATAGAACGCAATGAAATCATAAGAGGTTTAAGAAGCGGTGCTTTTGATATGCTAATTGGCATTAACTTACTTAG
AGAAGGACTTGATTTGCCTGAAGTTTCACTCATTGCCATTATGGATGCAGATAAGGAAGGCTTTTTAAGAAGTACAACAA
GTTTAATCCAAACCATGGGAAGAGCAGCTAGAAATGTCAATGGTAAGGTTTTGCTTTTTTGCAAAAAAATCACAAAATCC
ATGCAAGAAGCTATGGATACCACCAATGAACGCCGCAAACTTCAAATGGCTTATAATAAAAAATACAATATTACCCCAAC
TTCAGTCAAACGCCATATTGAAGAAAGTTTGAAAAATGAAGAGGATTTAGGCGAAATTTATCGCAAAGGTAAAAAACTAG
AAAAAATGCCAGCTAGCGAAAGAGCTAAACTTGTCAAAGAATTAAGAAAACAAATGCTTGAAGCAGCAAAAGCACTTGAG
TTTGAAAAAGCTGCCGCAATTAGAGATGAGATTAATAAATTAAGGGATTTATAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(623-656)

Helicase conserved C-terminal domain (Helicase_C)

(439-544)

UvrB interaction domain (UvrB_inter)

(158-246)

Ultra-violet resistance protein B (UvrB)

(552-593)

Type III restriction enzyme, res subunit (ResIII)

(8-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrB Streptococcus pneumoniae R6

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae TIGR4

50.926

98.63

0.502
  uvrB Streptococcus pneumoniae D39

50.926

98.63

0.502

Multiple sequence alignment