Detailed information    

insolico Bioinformatically predicted

Overview

Name   degS   Type   Regulator
Locus tag   BMMGA3_RS14560 Genome accession   NZ_CP007739
Coordinates   2980005..2981144 (-) Length   379 a.a.
NCBI ID   WP_003346477.1    Uniprot ID   -
Organism   Bacillus methanolicus MGA3     
Function   phosphorylation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2975005..2986144
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BMMGA3_RS14540 (BMMGA3_15025) - 2975494..2976990 (-) 1497 WP_003346467.1 DEAD/DEAH box helicase -
  BMMGA3_RS14545 (BMMGA3_15030) - 2977014..2977973 (-) 960 WP_038502316.1 hypothetical protein -
  BMMGA3_RS14550 (BMMGA3_15035) - 2978146..2978985 (-) 840 WP_034669156.1 DegV family protein -
  BMMGA3_RS14555 (BMMGA3_15040) degU 2979282..2979965 (-) 684 WP_038502319.1 response regulator Regulator
  BMMGA3_RS14560 (BMMGA3_15045) degS 2980005..2981144 (-) 1140 WP_003346477.1 sensor histidine kinase Regulator
  BMMGA3_RS14565 (BMMGA3_15050) - 2981536..2982168 (+) 633 WP_003346479.1 YigZ family protein -
  BMMGA3_RS14570 (BMMGA3_15055) - 2982273..2983301 (+) 1029 WP_034669139.1 LCP family protein -
  BMMGA3_RS14575 (BMMGA3_15060) - 2983455..2985884 (+) 2430 WP_003346484.1 SH3 domain-containing protein -

Sequence

Protein


Download         Length: 379 a.a.        Molecular weight: 44326.02 Da        Isoelectric Point: 6.4225

>NTDB_id=123017 BMMGA3_RS14560 WP_003346477.1 2980005..2981144(-) (degS) [Bacillus methanolicus MGA3]
MKAINFDTKTLDQILEKMIDTVVNSKDEIFRISEQCRKDYETLTDELKDVKQMVLQTIAEGDRLEVQARLARKRLSEVSM
HFKDYTEEEVRDAYEKAHNLQMDLTMNRQLEKQLRRRRDEIERRLAGLTETIERADYLISQITIVLNYLMSDLKQVGEVL
ENAKQKQDFGLKIIEAQEEERKRLSREIHDGPAQMLANVMMRSDLIERIYKERSAEEAIDEIRNLKRMVRSALYEVRRII
YDLRPMALDDLGLVPTLRKYLQTIEEYHNRTKIYFFNIGEDKRLPAKYEVALFRLVQESVQNALKHADASEIQVKLEINK
SHVNVVIKDNGKGFDTNEKKPESFGILGMKERVDLLEGEISIHSKIGAGTVIIIQVPLK

Nucleotide


Download         Length: 1140 bp        

>NTDB_id=123017 BMMGA3_RS14560 WP_003346477.1 2980005..2981144(-) (degS) [Bacillus methanolicus MGA3]
ATGAAAGCGATAAATTTTGATACGAAAACACTAGATCAAATTCTTGAAAAAATGATTGACACCGTTGTAAACAGCAAAGA
TGAAATTTTTCGAATCAGTGAGCAATGCCGCAAAGACTATGAAACTTTGACTGATGAACTAAAAGATGTAAAACAAATGG
TTCTTCAAACGATTGCTGAGGGGGACAGGCTTGAAGTTCAAGCCCGCCTTGCAAGAAAGCGCCTTTCCGAAGTGAGCATG
CATTTTAAAGATTATACAGAAGAAGAGGTCCGAGATGCCTATGAAAAGGCGCACAACCTCCAAATGGACCTTACGATGAA
TCGGCAGCTGGAAAAACAACTGAGGCGGCGCAGAGATGAAATTGAACGCAGGCTCGCTGGCCTAACGGAGACGATTGAAC
GGGCAGATTATCTTATTTCGCAAATAACGATTGTTTTAAATTATTTAATGAGTGATTTAAAGCAAGTGGGAGAAGTGCTG
GAAAATGCAAAACAAAAACAGGATTTTGGCCTGAAAATTATCGAAGCCCAAGAGGAAGAAAGAAAGAGGCTGTCCAGAGA
AATTCATGACGGACCGGCGCAAATGCTTGCCAATGTGATGATGCGTTCTGATTTAATTGAACGCATATATAAGGAAAGAA
GTGCAGAAGAAGCGATCGATGAAATCCGCAATTTAAAGCGGATGGTTCGATCTGCTCTGTACGAGGTGCGGCGAATCATT
TACGATTTGCGTCCAATGGCACTTGACGACCTTGGCCTCGTTCCTACCCTCAGAAAATATTTGCAGACTATCGAAGAATA
TCATAATAGGACAAAAATTTATTTTTTTAACATAGGTGAAGATAAAAGATTACCAGCAAAATACGAGGTTGCACTTTTCC
GCCTTGTGCAGGAATCTGTCCAAAATGCTTTGAAGCACGCTGATGCAAGTGAAATTCAAGTGAAATTGGAGATTAATAAA
TCACATGTAAACGTTGTAATAAAGGATAATGGAAAAGGTTTTGATACAAATGAGAAGAAGCCTGAATCGTTTGGCATCCT
TGGAATGAAGGAACGGGTAGATCTGCTTGAAGGCGAAATCTCGATTCATTCTAAAATAGGTGCCGGTACGGTTATCATCA
TACAAGTACCATTGAAGTAA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(289-378)

Histidine kinase (HisKA_3)

(180-248)

Sensor protein DegS (DegS)

(12-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  degS Bacillus subtilis subsp. subtilis str. 168

65.274

100

0.66

Multiple sequence alignment