Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE   Type   Machinery gene
Locus tag   NELON_RS08030 Genome accession   NZ_CP007726
Coordinates   1610369..1610698 (-) Length   109 a.a.
NCBI ID   WP_003775734.1    Uniprot ID   D4DVN0
Organism   Neisseria elongata subsp. glycolytica ATCC 29315     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 1606793..1609709 1610369..1610698 flank 660


Gene organization within MGE regions


Location: 1606793..1610698
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NELON_RS08005 (NELON_08440) - 1606793..1607800 (+) 1008 WP_041961453.1 IS5 family transposase -
  NELON_RS11775 - 1607769..1608209 (-) 441 WP_082019645.1 DUF3883 domain-containing protein -
  NELON_RS12965 (NELON_08445) - 1608225..1608653 (-) 429 WP_041961454.1 MrcB family domain-containing protein -
  NELON_RS12970 (NELON_08450) - 1608719..1609027 (-) 309 WP_041961455.1 MrcB family domain-containing protein -
  NELON_RS08020 (NELON_08455) - 1609263..1609610 (+) 348 Protein_1617 transposase -
  NELON_RS08025 (NELON_08460) - 1609731..1610120 (-) 390 Protein_1618 hypothetical protein -
  NELON_RS08030 (NELON_08465) comE 1610369..1610698 (-) 330 WP_003775734.1 ComEA family DNA-binding protein Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11178.03 Da        Isoelectric Point: 10.4122

>NTDB_id=122914 NELON_RS08030 WP_003775734.1 1610369..1610698(-) (comE) [Neisseria elongata subsp. glycolytica ATCC 29315]
MKKALFGLLSYAVTALALAAVNINTATVEELKALPGIGPAKAQAIVDYRKENGNFKSVEDLKKVKGIGEGIFGKLKDEAT
VGTAAPAKTTKPAAEKPAAQPAAGKNTAK

Nucleotide


Download         Length: 330 bp        

>NTDB_id=122914 NELON_RS08030 WP_003775734.1 1610369..1610698(-) (comE) [Neisseria elongata subsp. glycolytica ATCC 29315]
ATGAAAAAGGCTTTGTTCGGTTTGTTGTCTTATGCGGTTACGGCCTTGGCTTTGGCGGCCGTCAATATCAATACAGCCAC
GGTTGAGGAGTTGAAGGCTTTGCCCGGGATCGGTCCGGCAAAGGCTCAGGCCATTGTGGATTACCGTAAGGAAAACGGTA
ATTTCAAATCGGTGGAGGATTTGAAGAAGGTGAAGGGCATCGGCGAGGGTATCTTCGGTAAGTTGAAGGATGAGGCAACG
GTCGGTACCGCTGCGCCGGCTAAAACGACCAAACCCGCAGCCGAAAAACCTGCCGCCCAACCCGCAGCAGGGAAAAATAC
GGCTAAGTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(20-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB D4DVN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE Neisseria gonorrhoeae MS11

57.609

84.404

0.486
  comE Neisseria gonorrhoeae MS11

57.609

84.404

0.486
  comE Neisseria gonorrhoeae MS11

57.609

84.404

0.486
  comE Neisseria gonorrhoeae MS11

57.609

84.404

0.486
  Cj0011c Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

60.494

74.312

0.45

Multiple sequence alignment