Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   ACEE_RS08880 Genome accession   NZ_CP007715
Coordinates   1923041..1923676 (+) Length   211 a.a.
NCBI ID   WP_039198207.1    Uniprot ID   -
Organism   Actinobacillus equuli subsp. equuli strain 19392     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1918041..1928676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACEE_RS08835 (ACEE_09005) rplP 1918107..1918517 (-) 411 WP_005625160.1 50S ribosomal protein L16 -
  ACEE_RS08840 (ACEE_09010) rpsC 1918531..1919235 (-) 705 WP_014992367.1 30S ribosomal protein S3 -
  ACEE_RS08845 (ACEE_09015) rplV 1919254..1919586 (-) 333 WP_005599292.1 50S ribosomal protein L22 -
  ACEE_RS08850 (ACEE_09020) rpsS 1919597..1919872 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  ACEE_RS08855 (ACEE_09025) rplB 1919900..1920721 (-) 822 WP_014992368.1 50S ribosomal protein L2 -
  ACEE_RS08860 (ACEE_09030) rplW 1920742..1921047 (-) 306 WP_005599290.1 50S ribosomal protein L23 -
  ACEE_RS08865 (ACEE_09035) rplD 1921044..1921646 (-) 603 WP_005599282.1 50S ribosomal protein L4 -
  ACEE_RS08870 (ACEE_09040) rplC 1921662..1922288 (-) 627 WP_014992369.1 50S ribosomal protein L3 -
  ACEE_RS08875 (ACEE_09045) rpsJ 1922314..1922625 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  ACEE_RS08880 (ACEE_09050) sxy/tfoX 1923041..1923676 (+) 636 WP_039198207.1 TfoX/Sxy family DNA transformation protein Regulator
  ACEE_RS08885 (ACEE_09055) rpsT 1923735..1923998 (-) 264 WP_005619152.1 30S ribosomal protein S20 -
  ACEE_RS08890 (ACEE_09060) murJ 1924405..1925973 (+) 1569 WP_039198208.1 murein biosynthesis integral membrane protein MurJ -
  ACEE_RS08895 (ACEE_09065) - 1925994..1927061 (+) 1068 WP_039198210.1 MFS transporter -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24571.73 Da        Isoelectric Point: 9.6735

>NTDB_id=122854 ACEE_RS08880 WP_039198207.1 1923041..1923676(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain 19392]
MKYTAEELEKLKALLSPLGEVAFKPYFSFLGIFKDDTMFALYKNQQLYVRKSVQYLEEIAQTISIHFLVDRHISNRSKIF
YLLPPSILNNLQTYSHWISSAILEYQQSKAKIENQNQNKIRMLPNLNVSIERLLAKVGIYTVTDLKTVGAINVFVRLIQQ
GLEATALLLFKLYSAIQYKYIYMLTEQEKQDLLIEADNALYQAGLRKRFMP

Nucleotide


Download         Length: 636 bp        

>NTDB_id=122854 ACEE_RS08880 WP_039198207.1 1923041..1923676(+) (sxy/tfoX) [Actinobacillus equuli subsp. equuli strain 19392]
ATGAAATACACAGCAGAGGAGCTAGAAAAACTTAAAGCATTATTATCCCCTCTCGGGGAGGTCGCCTTTAAGCCTTATTT
TTCATTCTTAGGTATCTTTAAAGACGATACCATGTTTGCTCTCTACAAAAATCAACAGTTATACGTACGCAAATCGGTTC
AATACTTAGAGGAAATAGCTCAAACGATATCTATTCACTTTCTAGTTGATCGTCACATCAGCAATCGTTCTAAAATCTTT
TATCTTCTTCCTCCTTCCATTCTCAATAATCTGCAAACTTATTCCCACTGGATATCCTCAGCTATTCTCGAATATCAACA
GTCTAAAGCAAAAATCGAAAACCAAAATCAGAATAAAATTCGTATGTTGCCAAACTTAAATGTCAGTATTGAGAGATTAC
TGGCTAAAGTCGGTATTTATACGGTAACAGATTTAAAAACGGTAGGTGCAATTAACGTTTTCGTACGTTTAATCCAACAA
GGTTTGGAAGCAACCGCATTGTTATTATTTAAACTATATAGTGCGATTCAATATAAATATATTTATATGCTGACAGAACA
AGAAAAACAGGATTTACTGATTGAAGCCGACAATGCGCTTTATCAAGCTGGATTACGGAAAAGATTCATGCCGTGA

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-193)

TfoX N-terminal domain (TfoX_N)

(14-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Actinobacillus suis H91-0380

91.429

99.526

0.91
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

64.151

100

0.645
  sxy/tfoX Glaesserella parasuis strain SC1401

41.905

99.526

0.417

Multiple sequence alignment