Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   L1846_RS11950 Genome accession   NZ_CP007688
Coordinates   2388739..2389218 (-) Length   159 a.a.
NCBI ID   WP_047934369.1    Uniprot ID   -
Organism   Listeria monocytogenes strain L1846     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2383739..2394218
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L1846_RS11915 (L1846_02484) terS 2384820..2385560 (-) 741 WP_047934350.1 phage terminase small subunit -
  L1846_RS11920 (L1846_02485) - 2385600..2385827 (-) 228 WP_023548498.1 hypothetical protein -
  L1846_RS11925 (L1846_02486) - 2385911..2386930 (-) 1020 WP_047934356.1 hypothetical protein -
  L1846_RS11930 (L1846_02487) - 2387198..2387632 (-) 435 WP_047934359.1 ArpU family phage packaging/lysis transcriptional regulator -
  L1846_RS15420 (L1846_02488) - 2387655..2387780 (-) 126 WP_262405088.1 hypothetical protein -
  L1846_RS11935 (L1846_02489) - 2387799..2388185 (-) 387 WP_047934361.1 DUF2481 family protein -
  L1846_RS11940 (L1846_02490) - 2388189..2388593 (-) 405 WP_047934363.1 DUF1064 domain-containing protein -
  L1846_RS11945 (L1846_02491) - 2388538..2388720 (-) 183 WP_047934367.1 hypothetical protein -
  L1846_RS11950 (L1846_02492) ssbA 2388739..2389218 (-) 480 WP_047934369.1 single-stranded DNA-binding protein Machinery gene
  L1846_RS11955 (L1846_02493) - 2389218..2389496 (-) 279 WP_047934370.1 hypothetical protein -
  L1846_RS11960 (L1846_02494) - 2389493..2389828 (-) 336 WP_047934373.1 hypothetical protein -
  L1846_RS11965 (L1846_02495) - 2389828..2390016 (-) 189 WP_047934377.1 hypothetical protein -
  L1846_RS11970 (L1846_02496) - 2390013..2390534 (-) 522 WP_047934380.1 hypothetical protein -
  L1846_RS11975 (L1846_02497) - 2390531..2390914 (-) 384 WP_047934382.1 YopX family protein -
  L1846_RS11980 (L1846_02498) - 2390911..2391090 (-) 180 WP_047934384.1 hypothetical protein -
  L1846_RS11985 (L1846_02499) - 2391087..2391305 (-) 219 WP_149028505.1 hypothetical protein -
  L1846_RS11990 (L1846_02500) - 2391302..2391856 (-) 555 WP_047934390.1 DUF1642 domain-containing protein -
  L1846_RS11995 (L1846_02501) - 2391853..2392665 (-) 813 WP_003722560.1 DNA adenine methylase -
  L1846_RS12000 (L1846_02502) - 2392662..2393594 (-) 933 WP_046336554.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17741.65 Da        Isoelectric Point: 5.9404

>NTDB_id=122655 L1846_RS11950 WP_047934369.1 2388739..2389218(-) (ssbA) [Listeria monocytogenes strain L1846]
MMNRVVLVGRLTKDPDLRYTPAGVAVATFTLAVNRPFKNTQGEQETDFIQCVVWRKPAENVANFLKKGSMAGVDGRVQTR
NYEDSDGKRVFVTEVVAESVQFLEPRNHAEGATSNNYQSEANYSNNNKTSSYRADKSQKSDSFANEGKPIDINPDDLPF

Nucleotide


Download         Length: 480 bp        

>NTDB_id=122655 L1846_RS11950 WP_047934369.1 2388739..2389218(-) (ssbA) [Listeria monocytogenes strain L1846]
ATGATGAACCGTGTAGTACTTGTAGGACGATTAACAAAAGACCCAGATTTACGTTACACTCCGGCTGGCGTGGCAGTTGC
GACTTTTACTTTAGCTGTAAATCGCCCATTTAAAAATACACAAGGAGAACAAGAAACGGATTTTATTCAATGTGTTGTTT
GGCGTAAACCAGCCGAAAACGTTGCTAATTTCTTGAAGAAAGGAAGTATGGCGGGCGTTGATGGACGTGTTCAAACTCGT
AATTATGAGGATAGCGACGGTAAACGCGTTTTCGTTACAGAAGTAGTAGCTGAATCAGTTCAATTCTTAGAACCCAGAAA
CCACGCAGAAGGCGCTACATCGAATAATTATCAAAGCGAGGCTAATTATTCAAATAACAATAAAACAAGCTCATATAGAG
CGGATAAGAGCCAGAAGAGCGATTCATTTGCAAACGAAGGTAAGCCGATTGATATTAATCCGGATGATTTACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.628

100

0.667
  ssb Latilactobacillus sakei subsp. sakei 23K

52.941

100

0.566
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.929

70.44

0.415

Multiple sequence alignment