Detailed information NTG0121782

Bioinformatically predicted

Overview

• Name: clpC
• Type: Regulator
• Locus tag: MA06_RS20710
• Genome accession: NZ_CP007626
• Coordinates: 3691507..3694107 (+)
• Length: 866 a.a.
• NCBI ID: WP_018783039.1
• Uniprot ID: -
• Organism: Bacillus pseudomycoides strain 219298
• Function: degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3686507..3699107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MA06_RS20680 (DJ92_3779)	prsA	3687227..3688081 (-)	855	WP_018783040.1	peptidylprolyl isomerase PrsA	-
MA06_RS29620 (DJ92_3780)	-	3688205..3688336 (-)	132	WP_001120851.1	DUF3941 domain-containing protein	-
MA06_RS20685 (DJ92_3781)	-	3688444..3689301 (+)	858	WP_033798724.1	YitT family protein	-
MA06_RS20690 (DJ92_3782)	-	3689329..3689526 (-)	198	WP_003195898.1	DUF3813 domain-containing protein	-
MA06_RS20695 (DJ92_3783)	-	3689527..3689667 (-)	141	WP_003195901.1	hypothetical protein	-
MA06_RS20700 (DJ92_3784)	-	3689768..3690577 (-)	810	WP_003195903.1	Cof-type HAD-IIB family hydrolase	-
MA06_RS20705 (DJ92_3785)	-	3691121..3691300 (+)	180	WP_018763997.1	YjzC family protein	-
MA06_RS20710 (DJ92_3786)	clpC	3691507..3694107 (+)	2601	WP_018783039.1	ATP-dependent chaperone ClpB	Regulator
MA06_RS20715 (DJ92_3787)	-	3694146..3694328 (-)	183	WP_016113766.1	YjzD family protein	-
MA06_RS20720 (DJ92_3788)	-	3694486..3695220 (+)	735	WP_018783038.1	hydrolase	-
MA06_RS20725 (DJ92_3789)	-	3695278..3696138 (+)	861	WP_018783037.1	NAD(P)-dependent oxidoreductase	-
MA06_RS20730 (DJ92_3790)	comZ	3696555..3696728 (+)	174	WP_003195910.1	ComZ family protein	Regulator
MA06_RS20735 (DJ92_3791)	fabH	3697074..3698006 (+)	933	WP_018783036.1	beta-ketoacyl-ACP synthase III	-

Sequence

Protein

• Length: 866 a.a.
• Molecular weight: 97694.64 Da
• Isoelectric Point: 5.1499

>NTDB_id=121782 MA06_RS20710 WP_018783039.1 3691507..3694107(+) (clpC) [Bacillus pseudomycoides strain 219298]
MDLNQMTTKTQEAIMSAQSLAVSHHHQEVDTVHLLLALLQQQDGLAVRIFQKMNVNIEQLTKEVERLLQKKPSVTGSGVE
AGKVYVTNALGQLLVKAEAEAKKLQDEYISVEHVLLAFCEEKGDMNHLFTAFHITKDTLLQSLMEVRGNQRVTSQNPEVT
YEALEKYGRDLVAEVRQGKIDPVIGRDSEIRRVIRILSRKTKNNPVLIGEPGVGKTAIVEGLAQRIVRKDVPEGLKDRTI
FALDMSALVAGAKFRGEFEERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEGAMDAGNMLKPMLARGELHCIGATTLD
EYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDRYISDRFLPDKAIDLVDEA
CATIRTEIDSMPTELDEVTRRIMQLEIEEAALGKETDRGSQERLKTLQHELSDLKEVANGMRAQWQKEKEEIHKVRDLRE
HLERLRRELEEAEGNYDLNKAAELRHGKIPAVEKELREAEETGAHNEQENRLLREEVSEEEIANIVSRWTGIPVAKLVEG
EREKLLRLEQILSERVIGQEEAVSLVADAVLRARAGIKDPNRPIGSFIFLGPTGVGKTELAKTLAQSLFDSEEQIIRIDM
SEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEIEKAHPEVFNILLQMLDDGRITDSQGRTVDFKNTVI
IMTSNIGSGHLLEGLQEDGTIKEEARDLVMGQLRGHFRPEFLNRVDEIILFKPLTTNEIKGIVDKIVKELQGRLIDRHIT
VELTEVAKEFVVESGFDPMYGARPLKRYVQRQVETKLARELIAGTITDNSHVVVDVENNELVVHAQ

Nucleotide

• Length: 2601 bp

>NTDB_id=121782 MA06_RS20710 WP_018783039.1 3691507..3694107(+) (clpC) [Bacillus pseudomycoides strain 219298]
ATGGACTTAAATCAAATGACGACGAAAACACAAGAAGCAATTATGAGTGCTCAATCTTTAGCGGTATCTCATCATCATCA
AGAAGTTGATACTGTTCATCTATTACTTGCATTATTACAGCAGCAAGATGGATTAGCAGTGCGTATTTTTCAAAAAATGA
ATGTCAATATAGAACAATTAACGAAAGAAGTAGAAAGATTGCTTCAAAAGAAACCATCTGTTACAGGAAGTGGTGTAGAA
GCTGGCAAAGTGTATGTGACAAATGCTTTAGGGCAATTACTCGTTAAAGCAGAGGCAGAGGCAAAAAAACTGCAAGATGA
ATATATTTCAGTGGAACATGTATTGCTCGCATTTTGTGAGGAAAAAGGTGATATGAATCACTTGTTCACAGCATTTCACA
TTACGAAGGATACATTATTACAGTCTTTAATGGAAGTTCGGGGGAATCAGAGAGTGACTAGTCAAAATCCAGAAGTAACA
TATGAAGCGTTAGAAAAGTATGGCCGTGATTTAGTGGCAGAAGTAAGACAAGGGAAAATTGATCCTGTCATTGGTCGTGA
TAGCGAAATTCGTCGGGTTATCCGCATTCTTTCTCGTAAAACAAAAAACAACCCTGTTTTAATTGGTGAACCAGGCGTTG
GGAAAACAGCCATTGTTGAAGGATTGGCACAACGAATTGTGCGAAAAGATGTACCAGAAGGATTAAAAGATAGAACAATC
TTTGCGTTAGATATGAGCGCGCTTGTGGCGGGTGCAAAGTTCCGTGGTGAGTTTGAAGAACGTTTGCAAGCTGTGTTAAA
TGAAATCAAAAAAAGTGAAGGGCGTATTCTTTTATTCATTGATGAGCTCCATACAATTGTTGGTGCTGGTAAAACAGAAG
GGGCGATGGATGCAGGGAATATGTTAAAACCAATGCTTGCGCGCGGTGAACTTCATTGTATTGGTGCGACTACTTTAGAT
GAGTATCGAAAATATATTGAGAAAGATCCAGCGCTAGAACGTCGTTTTCAACAAGTGTTAGCAGAAGAGCCAACGGTAGA
AGATACAATTTCTATTTTACGTGGTTTAAAAGAGCGCTTTGAAATTTATCATGGTGTAAATATTCATGACCGTGCGATTG
TAGCGGCATCTGTATTGTCTGATCGATATATATCTGATCGCTTTTTACCAGATAAAGCGATTGACCTTGTTGATGAAGCG
TGCGCAACAATTCGAACAGAAATTGATTCTATGCCAACAGAATTGGATGAAGTAACGCGCCGCATTATGCAGCTGGAAAT
TGAAGAAGCTGCTTTAGGAAAAGAAACGGATCGTGGTAGTCAAGAGCGACTAAAAACATTGCAACATGAACTATCTGATT
TAAAAGAAGTTGCAAATGGAATGCGAGCGCAATGGCAAAAAGAAAAAGAAGAAATCCATAAAGTTCGTGACTTAAGGGAA
CACCTTGAACGTTTACGTCGTGAATTAGAAGAAGCAGAAGGGAATTACGACTTAAATAAAGCAGCAGAGCTTCGTCATGG
TAAAATTCCAGCAGTGGAAAAAGAATTAAGAGAAGCGGAAGAAACGGGAGCGCATAACGAACAAGAGAACCGTTTGCTTC
GTGAAGAAGTAAGTGAAGAAGAAATTGCAAATATCGTTTCACGTTGGACTGGCATACCAGTTGCAAAACTTGTAGAAGGT
GAACGTGAAAAACTGCTACGTTTAGAGCAAATTTTATCAGAACGTGTTATTGGGCAAGAGGAAGCAGTTAGTCTTGTGGC
GGATGCAGTTCTTCGTGCTCGCGCTGGTATTAAAGATCCAAATCGTCCAATCGGTTCATTCATTTTCTTAGGACCAACAG
GCGTTGGGAAAACAGAACTTGCGAAAACATTAGCACAATCTTTATTTGATAGTGAAGAGCAAATCATTCGCATTGATATG
TCCGAGTATATGGAGAAACATGCTGTGTCTCGCTTGATTGGAGCTCCTCCTGGATATGTAGGATATGAGGAAGGTGGACA
ATTAACAGAAGCCGTACGCCGTAAACCATATTCCGTTATTTTATTAGATGAAATTGAAAAAGCACATCCAGAAGTATTCA
ACATTTTATTACAAATGTTAGATGATGGGCGTATTACGGATTCACAAGGACGAACAGTGGATTTCAAAAATACAGTGATT
ATTATGACATCGAATATTGGTTCAGGGCATTTATTAGAAGGGTTACAAGAAGATGGTACAATTAAAGAGGAAGCAAGAGA
TCTTGTTATGGGGCAGCTTAGAGGACATTTTCGTCCAGAGTTTTTAAATCGTGTGGATGAAATTATTTTATTTAAACCAC
TTACAACAAATGAGATCAAAGGAATCGTTGATAAAATTGTAAAAGAGTTACAAGGGCGTTTAATAGATCGTCATATTACA
GTGGAATTAACAGAAGTAGCAAAAGAGTTTGTTGTGGAATCTGGGTTCGATCCGATGTATGGAGCGCGTCCATTAAAACG
ATATGTACAGCGTCAAGTTGAAACAAAGTTAGCACGTGAATTGATTGCGGGAACAATTACTGATAATAGTCATGTAGTTG
TTGATGTGGAAAATAACGAACTAGTTGTTCATGCCCAATAA

Domains

Predicted by InterproScan.

• C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small) (774-854)

• AAA lid domain (AAA_lid_9) (345-447)

• ATPase family associated with various cellular activities (AAA) (AAA) (206-339)

• AAA domain (Cdc48 subfamily) (AAA_2) (602-768)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (17-68)

• Clp amino terminal domain, pathogenicity island component (Clp_N) (97-148)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
clpC	Bacillus subtilis subsp. subtilis str. 168	47.603	100	0.482
clpE	Streptococcus pneumoniae Rx1	46.288	79.33	0.367
clpE	Streptococcus pneumoniae D39	46.288	79.33	0.367
clpE	Streptococcus pneumoniae R6	46.288	79.33	0.367