Detailed information NTG0121564

Bioinformatically predicted

Overview

• Name: comB9
• Type: Machinery gene
• Locus tag: EG63_RS00225
• Genome accession: NZ_CP007604
• Coordinates: 38318..39289 (+)
• Length: 323 a.a.
• NCBI ID: WP_038417116.1
• Uniprot ID: -
• Organism: Helicobacter pylori strain BM013A
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 33318..44289

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EG63_RS00195 (EG63_00200)	panD	34733..35086 (+)	354	WP_038417112.1	aspartate 1-decarboxylase	-
EG63_RS00200 (EG63_00205)	-	35089..35391 (+)	303	WP_000347928.1	YbaB/EbfC family nucleoid-associated protein	-
EG63_RS00205 (EG63_00210)	-	35391..36386 (+)	996	WP_038417113.1	PDZ domain-containing protein	-
EG63_RS00210 (EG63_00215)	comB6	36394..37449 (+)	1056	WP_038417114.1	P-type conjugative transfer protein TrbL	Machinery gene
EG63_RS00215	comB7	37465..37578 (+)	114	WP_001217873.1	hypothetical protein	Machinery gene
EG63_RS00220 (EG63_00225)	comB8	37575..38318 (+)	744	WP_038417115.1	type IV secretion system protein	Machinery gene
EG63_RS00225 (EG63_00230)	comB9	38318..39289 (+)	972	WP_038417116.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
EG63_RS00230 (EG63_00235)	comB10	39282..40418 (+)	1137	WP_038417117.1	DNA type IV secretion system protein ComB10	Machinery gene
EG63_RS00235 (EG63_00240)	-	40488..41906 (+)	1419	WP_038417118.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
EG63_RS00240 (EG63_00245)	gmd	41931..43076 (+)	1146	WP_038417119.1	GDP-mannose 4,6-dehydratase	-
EG63_RS00245 (EG63_00250)	-	43069..44001 (+)	933	WP_038417120.1	GDP-L-fucose synthase family protein	-

Sequence

Protein

• Length: 323 a.a.
• Molecular weight: 37253.81 Da
• Isoelectric Point: 9.3412

>NTDB_id=121564 EG63_RS00225 WP_038417116.1 38318..39289(+) (comB9) [Helicobacter pylori strain BM013A]
MRKVLYTLMGFLLAFSALKADDFLEEANETAPTNLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNISVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIDDKN
YYSNAFMKPQNKENKENTFENAPINNKPLKEEKEETKEEETITIGDSTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSK
KSKPSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFVKKG
KDE

Nucleotide

• Length: 972 bp

>NTDB_id=121564 EG63_RS00225 WP_038417116.1 38318..39289(+) (comB9) [Helicobacter pylori strain BM013A]
ATGCGTAAGGTTTTATATACCCTCATGGGCTTTTTGTTGGCTTTTAGTGCTTTAAAAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCAACGAATTTAAACCACCCCATGCAGGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAAAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTGTTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGACGCGAAAATTTTAGAAAG
TAACGATCGCATTTTACTCATCAAACCCCTACAAATTGGCGTGGATTCTAATATCAGCGTGATTGACAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGACGATAAAAAC
TATTATTCCAACGCTTTTATGAAGCCGCAAAATAAAGAAAATAAAGAAAATACCTTTGAAAATGCCCCCATAAATAACAA
ACCCTTAAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACTATTGGCGATAGCACCAATGCGATGAAAATCG
TTAAAAAAGACATTCAAAAAGGTTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTGGGGATTTGTTCTAAA
AAATCCAAACCCTCTTTGATGCCTGAAGAAATCTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGC
GCTCTCTAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACA
TTATCGCTGAAGACGTTTCGGCTAAATGGACTTTAAGGCTAGGCAAGGACTATTTGTGTATCCGTTTTGTCAAAAAGGGT
AAAGATGAATAA

Domains

Predicted by InterproScan.

• Conjugal transfer protein (CagX) (62-314)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB9	Helicobacter pylori P1	92.638	100	0.935