Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   EG65_RS01675 Genome accession   NZ_CP007603
Coordinates   342419..343219 (+) Length   266 a.a.
NCBI ID   WP_026937975.1    Uniprot ID   -
Organism   Helicobacter pylori J166     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 337419..348219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG65_RS01640 (EG65_01695) pseH 337919..338461 (+) 543 WP_026937971.1 UDP-4-amino-4, 6-dideoxy-N-acetyl-beta-L-altrosamine N-acetyltransferase -
  EG65_RS01645 (EG65_01700) - 338394..339332 (-) 939 WP_026937972.1 tetraacyldisaccharide 4'-kinase -
  EG65_RS01650 (EG65_01705) - 339329..340111 (-) 783 WP_026937973.1 NAD+ synthase -
  EG65_RS01660 (EG65_01715) ilvC 340360..341352 (+) 993 WP_026937974.1 ketol-acid reductoisomerase -
  EG65_RS01665 (EG65_01720) minD 341376..342182 (+) 807 WP_001019055.1 septum site-determining protein MinD -
  EG65_RS01670 (EG65_01725) minE 342179..342412 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  EG65_RS01675 (EG65_01730) dprA 342419..343219 (+) 801 WP_026937975.1 DNA-processing protein DprA Machinery gene
  EG65_RS01680 (EG65_01735) dprB 343216..343620 (+) 405 WP_026937976.1 Holliday junction resolvase RuvX Machinery gene
  EG65_RS01685 (EG65_01740) - 343779..344645 (+) 867 WP_187290090.1 tetratricopeptide repeat protein -
  EG65_RS01690 (EG65_01745) - 344833..345171 (+) 339 WP_000699880.1 hypothetical protein -
  EG65_RS01695 (EG65_01750) - 345155..345715 (+) 561 WP_026937978.1 hypothetical protein -
  EG65_RS01700 (EG65_01760) - 345820..346701 (-) 882 WP_026937979.1 RluA family pseudouridine synthase -

Sequence

Protein


Download         Length: 266 a.a.        Molecular weight: 29806.70 Da        Isoelectric Point: 7.8230

>NTDB_id=121545 EG65_RS01675 WP_026937975.1 342419..343219(+) (dprA) [Helicobacter pylori J166]
MKSHFQYSALENIPKAFDILKDPPKKLYCVGDTKLLEAPLKVAIIGTRRPTPYSKQHTITLARELAKNGAVIVSGGALGV
DIIAQENALPKTIMLSPCSLDLIYPTNNHKVIQEIAQNGLILSEYEKDFMPIKGSFLARNRLVIALSDAVIIPQADLKSG
SMSSARLAQKYQKPLFVLPQRLNESDGTNELLEKGQAQGIFNIQNFINTLLKDHHLKEMPEMEDEFLEYCAKNPSYEEAY
LKFGDKLLEYELLGKIKRINHLVVLA

Nucleotide


Download         Length: 801 bp        

>NTDB_id=121545 EG65_RS01675 WP_026937975.1 342419..343219(+) (dprA) [Helicobacter pylori J166]
ATGAAAAGCCATTTCCAATACAGCGCGCTAGAAAATATCCCTAAAGCCTTTGACATTCTCAAAGACCCCCCTAAAAAGCT
CTATTGTGTGGGCGATACCAAGCTTTTAGAAGCGCCTTTAAAAGTGGCTATCATAGGCACAAGAAGACCCACCCCTTACA
GCAAGCAACACACGATTACTCTAGCCAGAGAGCTTGCTAAAAATGGCGCGGTTATTGTGAGCGGGGGAGCGTTAGGCGTG
GATATTATCGCTCAAGAAAACGCCTTGCCAAAAACGATCATGCTTTCGCCTTGCAGTTTGGATTTGATTTATCCTACGAA
CAACCATAAAGTGATCCAAGAAATCGCGCAAAACGGCTTGATTTTAAGCGAATATGAAAAAGACTTCATGCCCATTAAAG
GCTCTTTTTTAGCGAGAAACCGCCTAGTGATCGCTTTAAGCGATGCGGTGATTATCCCCCAAGCGGATTTAAAAAGCGGC
TCTATGAGCAGCGCGAGATTAGCCCAAAAATACCAAAAACCCTTGTTTGTTTTACCCCAACGCTTGAACGAGAGCGACGG
CACTAATGAGCTTTTAGAAAAAGGGCAGGCTCAAGGGATATTTAATATTCAAAATTTTATAAACACCCTTTTAAAAGACC
ACCATTTAAAAGAAATGCCTGAAATGGAAGATGAATTTTTAGAATATTGCGCGAAAAACCCTAGCTATGAAGAGGCGTAT
CTCAAATTTGGGGATAAGCTTTTAGAATACGAGCTGTTAGGTAAGATTAAGCGTATCAATCATCTCGTGGTGTTAGCATG
A

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(12-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Helicobacter pylori 26695

97.368

100

0.974
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

48.673

84.962

0.414

Multiple sequence alignment