Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprB   Type   Machinery gene
Locus tag   EG65_RS01680 Genome accession   NZ_CP007603
Coordinates   343216..343620 (+) Length   134 a.a.
NCBI ID   WP_026937976.1    Uniprot ID   -
Organism   Helicobacter pylori J166     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 338216..348620
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EG65_RS01645 (EG65_01700) - 338394..339332 (-) 939 WP_026937972.1 tetraacyldisaccharide 4'-kinase -
  EG65_RS01650 (EG65_01705) - 339329..340111 (-) 783 WP_026937973.1 NAD+ synthase -
  EG65_RS01660 (EG65_01715) ilvC 340360..341352 (+) 993 WP_026937974.1 ketol-acid reductoisomerase -
  EG65_RS01665 (EG65_01720) minD 341376..342182 (+) 807 WP_001019055.1 septum site-determining protein MinD -
  EG65_RS01670 (EG65_01725) minE 342179..342412 (+) 234 WP_000051414.1 cell division topological specificity factor MinE -
  EG65_RS01675 (EG65_01730) dprA 342419..343219 (+) 801 WP_026937975.1 DNA-processing protein DprA Machinery gene
  EG65_RS01680 (EG65_01735) dprB 343216..343620 (+) 405 WP_026937976.1 Holliday junction resolvase RuvX Machinery gene
  EG65_RS01685 (EG65_01740) - 343779..344645 (+) 867 WP_187290090.1 tetratricopeptide repeat protein -
  EG65_RS01690 (EG65_01745) - 344833..345171 (+) 339 WP_000699880.1 hypothetical protein -
  EG65_RS01695 (EG65_01750) - 345155..345715 (+) 561 WP_026937978.1 hypothetical protein -
  EG65_RS01700 (EG65_01760) - 345820..346701 (-) 882 WP_026937979.1 RluA family pseudouridine synthase -
  EG65_RS01705 (EG65_01765) recJ 346701..348251 (-) 1551 WP_026937980.1 single-stranded-DNA-specific exonuclease RecJ -

Sequence

Protein


Download         Length: 134 a.a.        Molecular weight: 15238.74 Da        Isoelectric Point: 9.1542

>NTDB_id=121546 EG65_RS01680 WP_026937976.1 343216..343620(+) (dprB) [Helicobacter pylori J166]
MILACDVGLKRIGIAMLLNGVILPLEAILRHNRNQASRDLSDLLREKNVQVLVVGKPNESYADTHARIEHFIKLVDFKGE
IVFINEDNSSVEAYENLEHLGKKNKKLATKDGRLDSLSACRILERYCQQVLKKR

Nucleotide


Download         Length: 405 bp        

>NTDB_id=121546 EG65_RS01680 WP_026937976.1 343216..343620(+) (dprB) [Helicobacter pylori J166]
ATGATTTTGGCATGCGATGTGGGGCTAAAACGCATTGGCATCGCTATGCTTTTAAACGGCGTTATCTTGCCTTTAGAAGC
GATTTTACGCCACAACAGGAATCAGGCCTCTAGGGATTTGAGCGATTTATTGAGGGAAAAAAATGTTCAGGTGCTGGTGG
TTGGCAAGCCCAATGAAAGCTATGCGGACACCCACGCCCGCATTGAGCATTTTATCAAGCTTGTAGATTTTAAGGGCGAA
ATCGTTTTTATTAATGAAGATAACTCTAGCGTAGAAGCTTATGAAAATTTAGAGCATTTGGGTAAGAAAAACAAGAAGCT
CGCTACCAAAGACGGCCGGTTAGACTCTTTGAGCGCTTGTCGGATTTTAGAGCGCTATTGCCAGCAGGTTTTAAAAAAGC
GCTAG

Domains

Predicted by InterproScan.

Holliday junction resolvase (RuvX)

(2-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprB Helicobacter pylori 26695

93.182

98.507

0.918

Multiple sequence alignment