Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   DK41_RS03875 Genome accession   NZ_CP007570
Coordinates   743561..744565 (+) Length   334 a.a.
NCBI ID   WP_001090620.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS1-NY     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 738561..749565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK41_RS03860 (DK41_03925) ltrA 739405..740682 (+) 1278 WP_001292556.1 group II intron reverse transcriptase/maturase -
  DK41_RS03865 (DK41_03930) - 740732..742144 (-) 1413 WP_017771557.1 IS1182 family transposase -
  DK41_RS03870 (DK41_03935) - 742266..743351 (-) 1086 WP_000040814.1 Xaa-Pro peptidase family protein -
  DK41_RS03875 (DK41_03940) ccpA 743561..744565 (+) 1005 WP_001090620.1 catabolite control protein A Regulator
  DK41_RS03880 (DK41_03945) - 744697..746163 (+) 1467 WP_000180581.1 alpha-amylase -
  DK41_RS03885 (DK41_03950) - 746208..747206 (+) 999 WP_000866345.1 glycosyltransferase -
  DK41_RS03890 (DK41_03955) - 747208..748542 (+) 1335 WP_001219475.1 glycosyltransferase family 4 protein -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36675.73 Da        Isoelectric Point: 5.4745

>NTDB_id=121049 DK41_RS03875 WP_001090620.1 743561..744565(+) (ccpA) [Streptococcus agalactiae strain GBS1-NY]
MNTDDTITIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANSYFS
ILARGIDDIAAMYKYNIVLASSDEDDDKEVNVVNTLFAKQVDGIIFMGHHLTEKIRAEFSRSRTPIVLAGTVDLEHQLPS
VNIDYKAAAVDVIDILAGNHKDIAFVSGPLIDDINGKVRLAGYKEGLKKNGLNFKEGLVFEANYRYAEGFALAQRVINAG
ATAAYVAEDELAAGLLNGLFEADKRVPEDFEIITSNDSPIAQYTRPNLTSISQPVYDLGAVSMRMLTKIMHKEELEEKEI
VLNHGIVKRGTTNN

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=121049 DK41_RS03875 WP_001090620.1 743561..744565(+) (ccpA) [Streptococcus agalactiae strain GBS1-NY]
ATGAATACAGATGATACGATTACGATTTATGATGTTGCCCGTGAAGCAGGTGTTTCGATGGCAACTGTTAGTCGTGTGGT
AAATGGAAATAAAAATGTCAAGGAAAATACACGTAAGAAAGTCCTTGAAGTTATTGATCGTCTTGACTATCGTCCAAATG
CTGTGGCGCGTGGTTTAGCAAGTAAAAAAACGACAACTGTTGGTGTTGTCATTCCTAATATCGCAAATAGCTATTTTTCA
ATTTTAGCGCGTGGTATTGATGATATTGCAGCAATGTACAAATATAACATTGTCCTTGCTTCAAGTGATGAAGACGATGA
TAAAGAGGTTAATGTTGTTAATACTTTGTTCGCTAAACAAGTAGACGGTATTATTTTTATGGGACACCACTTAACTGAAA
AGATTCGTGCAGAGTTCTCTCGTTCACGCACACCGATTGTTTTAGCAGGTACTGTGGACCTTGAGCATCAATTACCAAGT
GTTAATATCGATTACAAAGCAGCAGCAGTTGATGTTATTGATATTTTAGCTGGCAATCATAAAGACATTGCTTTTGTATC
AGGACCACTTATTGACGATATTAATGGCAAGGTTCGTTTGGCAGGATACAAAGAAGGTCTCAAGAAAAATGGCTTAAACT
TTAAAGAGGGGTTGGTTTTTGAAGCCAACTACCGTTATGCTGAAGGCTTTGCATTAGCTCAACGCGTGATTAATGCTGGA
GCAACAGCAGCATATGTTGCTGAGGATGAGTTAGCGGCAGGTTTGTTAAATGGTCTTTTTGAGGCAGATAAACGTGTCCC
TGAAGATTTTGAAATTATCACAAGCAATGACTCGCCAATCGCACAATATACACGTCCTAACTTAACTTCTATCAGTCAAC
CGGTCTATGATTTGGGTGCTGTTAGCATGCGTATGCTAACAAAAATTATGCACAAAGAAGAGTTGGAAGAAAAAGAAATA
GTGCTTAATCACGGGATTGTTAAACGTGGCACAACAAATAATTAG

Domains

Predicted by InterproScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(179-332)

Bacterial regulatory proteins, lacI family (LacI)

(8-53)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus gordonii str. Challis substr. CH1

78.614

99.401

0.781
  ccpA Streptococcus pneumoniae D39

76.807

99.401

0.763
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

57.1

99.102

0.566

Multiple sequence alignment