Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   D082_RS15115 Genome accession   NZ_CP007542
Coordinates   3317906..3320263 (-) Length   785 a.a.
NCBI ID   WP_238546753.1    Uniprot ID   -
Organism   Synechocystis sp. PCC 6714     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3312906..3325263
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D082_RS15090 (D082_33360) ndhC 3313360..3313722 (-) 363 WP_028948295.1 photosynthetic/respiratory NAD(P)H-quinone oxidoreductase subunit C -
  D082_RS15095 (D082_33370) thrC 3314018..3315166 (+) 1149 WP_051738897.1 threonine synthase -
  D082_RS15100 (D082_33380) tilS 3315252..3316253 (-) 1002 WP_028948293.1 tRNA lysidine(34) synthetase TilS -
  D082_RS15105 (D082_33390) - 3316303..3317055 (+) 753 WP_028948292.1 FkbM family methyltransferase -
  D082_RS15110 (D082_33400) - 3317073..3317897 (+) 825 WP_028948291.1 FkbM family methyltransferase -
  D082_RS15115 (D082_33410) pilQ 3317906..3320263 (-) 2358 WP_238546753.1 type IV pilus secretin PilQ Machinery gene
  D082_RS15120 (D082_33420) pilO 3320360..3321202 (-) 843 WP_028948289.1 hypothetical protein Machinery gene
  D082_RS15125 (D082_33430) pilN 3321254..3322102 (-) 849 WP_028948288.1 PilN domain-containing protein Machinery gene
  D082_RS15130 (D082_33440) pilM 3322217..3323320 (-) 1104 WP_028948287.1 type IV pilus biogenesis protein PilM Machinery gene
  D082_RS15135 (D082_33460) - 3323519..3323959 (-) 441 WP_028948286.1 hypothetical protein -
  D082_RS15140 (D082_33470) - 3323988..3324752 (-) 765 WP_028948285.1 iron uptake porin -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 84329.49 Da        Isoelectric Point: 4.3661

>NTDB_id=120745 D082_RS15115 WP_238546753.1 3317906..3320263(-) (pilQ) [Synechocystis sp. PCC 6714]
MKNFRFWLTTEIVACCLVALAPAQAENLPQSDTFGHGSETAIAKDIAANSAQDWESWEKSLEKSLKEPSKIDSWSPPLEL
TRAKSLAKPEKRLTELGLLVQELEALSEPLTLNFPEPDQTSVAQMAPPSRPMPPPPAGSGQVMFPNPEIIIQQQGGAPQA
GPRVGNPSILSPAVPVAPVRSRAVPPPVGDLAISNINASFDMIDLGQRGQVNVPSLVLREAPAREVLAVLTRYAGMNLIF
TDNQNSEGTATPGTPPGGQVAAPQAQSTITLDIQNESVQDVFNYVLMASGLKASRRGNTIFAGASLLPSARNIITRTIRL
NQASAESVASTLASQGAEVNILFEGQEDVQLAENAPPRVIKQPPTLVPLTVQKPANDSSVLILEGLVVSTDPRLNTVTLV
GEPRNVELASSMITQMDARRRQVAVNVKIIDINLNNIQDYDSSFSFGIGDSFFVQDSGRGIMRFGDTAPVQEIDINNSLG
RVTNPPAIVNPFFNAPGEDVFFDLSRLTNIETPLGTGTIPLNFFTSGSGAISNNPLFTGVTEFPIAEVDEEGVLTVTYPE
FGLPSFYQYPKKFQAQIDAQIRSGNAKILTDPTLIVQEGEAAQVKLTESVIASVDTQVDTQGDTAVRTITPVLEDVGLTL
NVIVDRIDDNGFITLRVNPIVASPAGTERFDSGAGAVNEITLINKRELTSGVVRLRDDQTFILSGIISELQRSTTSKVPI
LGDLPVIGALFRQSTDTTDRSEVIILMTPKIIPDGTEAQFGFRYNPDAATAEFLRQKGFPVQAQP

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=120745 D082_RS15115 WP_238546753.1 3317906..3320263(-) (pilQ) [Synechocystis sp. PCC 6714]
GTGAAAAATTTTCGGTTTTGGTTAACGACGGAGATAGTTGCCTGTTGTTTGGTGGCCCTAGCACCGGCTCAAGCGGAAAA
CCTCCCCCAGTCGGACACATTTGGCCACGGTTCAGAAACGGCGATCGCCAAAGATATTGCCGCGAACTCCGCTCAAGATT
GGGAGAGCTGGGAGAAAAGTTTAGAAAAATCCCTTAAGGAACCAAGCAAAATTGATTCCTGGTCGCCACCACTGGAGTTG
ACCCGGGCAAAATCCCTCGCTAAGCCGGAGAAAAGGTTAACTGAGCTTGGGTTGCTAGTGCAGGAGTTGGAAGCCCTATC
CGAGCCTTTAACATTAAACTTTCCAGAACCAGACCAGACCAGTGTTGCTCAGATGGCTCCCCCTAGTCGTCCCATGCCTC
CCCCCCCAGCGGGCAGTGGGCAAGTAATGTTTCCCAATCCGGAAATCATTATTCAGCAACAGGGTGGTGCTCCCCAAGCT
GGCCCTAGAGTCGGTAATCCCAGCATTCTGTCCCCCGCTGTGCCTGTGGCTCCAGTACGTTCCCGCGCAGTGCCTCCACC
GGTGGGGGATTTGGCTATTTCCAATATTAATGCGTCCTTCGACATGATTGATCTTGGGCAAAGAGGTCAAGTTAACGTAC
CGAGTTTAGTGTTGCGGGAGGCCCCTGCCAGGGAGGTGCTAGCCGTCTTGACCCGCTATGCTGGCATGAATCTAATTTTC
ACGGATAATCAGAATTCTGAGGGCACAGCCACTCCAGGTACACCTCCCGGTGGTCAAGTGGCGGCTCCCCAAGCTCAGTC
GACGATTACGTTGGATATTCAAAATGAAAGTGTTCAGGACGTCTTTAACTACGTTCTAATGGCATCAGGTTTAAAGGCCA
GTCGTCGGGGCAATACCATCTTTGCCGGAGCCAGTTTGTTGCCTTCCGCCAGGAACATCATCACCCGCACCATTAGACTG
AACCAGGCCAGTGCTGAGTCCGTAGCGAGTACTTTGGCTTCCCAGGGTGCAGAAGTTAACATTTTGTTTGAAGGACAGGA
GGATGTCCAACTCGCAGAAAATGCTCCCCCAAGGGTAATTAAACAACCGCCCACATTGGTACCACTGACAGTGCAAAAAC
CCGCCAACGATTCTTCAGTGTTAATTCTGGAAGGATTAGTTGTTAGTACTGACCCTCGTCTAAACACTGTGACTTTGGTG
GGGGAACCCCGCAATGTGGAGTTAGCTAGCTCCATGATCACGCAAATGGATGCCCGCCGTCGTCAAGTGGCAGTTAACGT
CAAAATTATTGATATAAATCTGAATAACATCCAGGATTATGACAGCAGTTTTTCCTTTGGCATAGGAGATAGTTTCTTTG
TCCAAGACAGTGGCAGGGGAATAATGCGTTTTGGTGACACGGCTCCAGTTCAGGAAATTGACATTAACAATAGTTTAGGG
CGAGTTACTAACCCCCCTGCCATCGTCAATCCATTTTTTAATGCTCCCGGTGAAGATGTTTTCTTTGACCTTAGTAGACT
AACCAATATTGAGACTCCCCTTGGTACAGGAACAATTCCTCTTAATTTCTTTACATCAGGATCGGGAGCTATTTCCAATA
ATCCACTATTCACTGGGGTTACCGAATTTCCAATTGCAGAAGTTGATGAAGAGGGAGTTTTAACAGTCACTTATCCCGAG
TTTGGCTTGCCATCTTTTTATCAATATCCTAAAAAATTTCAGGCACAAATTGACGCTCAGATACGTAGTGGCAATGCTAA
AATTCTCACCGATCCAACTTTAATTGTTCAGGAGGGTGAGGCCGCTCAAGTTAAGTTAACAGAATCTGTTATTGCCAGTG
TTGACACGCAAGTTGATACCCAGGGAGATACAGCAGTCAGGACTATCACACCAGTTCTCGAAGATGTTGGGCTGACACTA
AATGTCATAGTTGATCGAATTGATGACAATGGCTTTATTACTTTGCGGGTTAACCCCATCGTTGCATCTCCTGCTGGCAC
AGAACGATTTGACAGCGGTGCCGGTGCCGTCAACGAAATAACACTGATAAACAAAAGAGAACTTACTTCCGGTGTAGTTC
GGCTGAGGGATGATCAGACGTTTATCCTGTCCGGCATTATTTCGGAACTTCAACGTTCTACCACAAGTAAAGTTCCAATT
CTGGGGGATTTACCAGTGATTGGGGCATTGTTTAGGCAGTCCACAGACACTACAGACCGTTCGGAAGTTATTATTCTCAT
GACTCCCAAAATTATTCCTGATGGTACGGAGGCTCAATTCGGCTTCCGCTATAATCCCGATGCGGCGACGGCGGAATTCC
TGCGGCAAAAAGGATTCCCAGTTCAGGCTCAGCCATAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(315-422)

Bacterial type II and III secretion system protein (Secretin)

(581-752)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Synechocystis sp. PCC 6803

89.708

100

0.899

Multiple sequence alignment