Detailed information NTG0120331

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NMA510612_RS11035
• Genome accession: NZ_CP007524
• Coordinates: 2107169..2108029 (+)
• Length: 286 a.a.
• NCBI ID: WP_002220276.1
• Uniprot ID: -
• Organism: Neisseria meningitidis strain 510612
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2102169..2113029

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMA510612_RS11020 (NMA510612_2440)	dapD	2102875..2103696 (-)	822	WP_002216408.1	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	-
NMA510612_RS11025 (NMA510612_2442)	pgi	2103863..2105506 (-)	1644	WP_002245857.1	glucose-6-phosphate isomerase	-
NMA510612_RS11030 (NMA510612_2443)	pilG	2105863..2107095 (+)	1233	WP_002216405.1	type 4 pilus assembly protein PilG	Machinery gene
NMA510612_RS11035 (NMA510612_2444)	pilD	2107169..2108029 (+)	861	WP_002220276.1	A24 family peptidase	Machinery gene
NMA510612_RS11040 (NMA510612_2445)	coaE	2108031..2108663 (+)	633	WP_002245856.1	dephospho-CoA kinase	-
NMA510612_RS11045 (NMA510612_2446)	-	2108656..2108865 (+)	210	WP_002212333.1	DNA gyrase inhibitor YacG	-
NMA510612_RS11050 (NMA510612_2447)	pilF	2108950..2110626 (-)	1677	WP_002245855.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NMA510612_RS11060 (NMA510612_2450)	-	2111068..2111514 (-)	447	WP_002233503.1	DUF441 domain-containing protein	-
NMA510612_RS11065 (NMA510612_2451)	ispB	2111519..2112493 (-)	975	WP_002216396.1	octaprenyl diphosphate synthase	-
NMA510612_RS11070 (NMA510612_2453)	rplU	2112717..2113025 (+)	309	WP_002216394.1	50S ribosomal protein L21	-

Sequence

Protein

• Length: 286 a.a.
• Molecular weight: 31359.40 Da
• Isoelectric Point: 8.2213

>NTDB_id=120331 NMA510612_RS11035 WP_002220276.1 2107169..2108029(+) (pilD) [Neisseria meningitidis strain 510612]
MSDLSVLSPFAVPLAAVFGLLVGSFLNVVIYRVPVMMERGWTVFAKEYLNLPLTEEESRTFNLMKPDSCCPKCRVPIRAW
QNIPIVSYLLLRGKCASCQTKISIRYPLIELLTGVLFGLVAWQYGWSWITLGGLILTAFLISLTFIDADTQYLPDSMTLP
LIWLGLIFNLDGGFVPLQSAVLGAVAGYGSIWLLCAVYKLIKGEIGMGNGDFKLIAALGAWLGISALPVLIFVSSLIGLV
AAIVMRVAKGQHFAFGPALTVSGWIIFTANDSVWRAVNWWLTHPVL

Nucleotide

• Length: 861 bp

>NTDB_id=120331 NMA510612_RS11035 WP_002220276.1 2107169..2108029(+) (pilD) [Neisseria meningitidis strain 510612]
ATGTCTGATTTGTCTGTATTGTCGCCGTTTGCCGTGCCTTTGGCAGCGGTGTTCGGGCTGCTGGTCGGAAGTTTCTTAAA
TGTCGTCATTTACCGCGTGCCGGTCATGATGGAACGCGGCTGGACGGTATTTGCCAAAGAATATTTAAACCTGCCGCTGA
CCGAAGAGGAAAGCCGTACCTTCAACCTGATGAAACCGGATTCCTGCTGTCCCAAATGTCGCGTGCCGATACGCGCGTGG
CAGAACATCCCGATTGTCAGCTACCTGCTCCTGCGCGGCAAATGCGCTTCCTGCCAAACCAAAATCAGCATACGTTATCC
CTTAATCGAGCTGCTGACCGGCGTATTGTTCGGGCTGGTTGCCTGGCAATACGGCTGGTCTTGGATTACATTGGGCGGTT
TGATACTGACCGCGTTTCTGATTTCCCTGACCTTTATCGATGCGGACACCCAATACCTGCCCGACTCGATGACCTTACCC
TTGATTTGGCTGGGGCTGATATTTAATTTGGACGGCGGCTTCGTGCCTTTGCAGTCTGCCGTTTTAGGTGCGGTTGCCGG
CTATGGTTCGATATGGCTTTTATGCGCGGTATATAAACTGATTAAAGGCGAAATCGGTATGGGCAACGGAGATTTCAAAC
TGATTGCCGCATTGGGCGCGTGGCTCGGCATATCCGCATTGCCCGTGCTGATTTTTGTTTCCTCGCTGATCGGTTTGGTC
GCGGCAATCGTTATGCGCGTCGCCAAGGGGCAGCATTTTGCCTTCGGCCCCGCACTGACAGTTTCGGGCTGGATAATTTT
TACGGCAAACGATTCCGTATGGCGGGCGGTCAACTGGTGGCTGACCCATCCGGTGCTGTAA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (17-124)

• Type IV leader peptidase family (Peptidase_A24) (134-242)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Neisseria gonorrhoeae MS11	96.14	99.65	0.958
pilD	Vibrio cholerae strain A1552	44.444	100	0.448
pilD	Vibrio campbellii strain DS40M4	44.928	96.503	0.434
pilD	Acinetobacter baumannii D1279779	46.97	92.308	0.434
pilD	Acinetobacter nosocomialis M2	46.97	92.308	0.434