Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   NMA510612_RS03300 Genome accession   NZ_CP007524
Coordinates   638491..640728 (-) Length   745 a.a.
NCBI ID   WP_002250660.1    Uniprot ID   X5F782
Organism   Neisseria meningitidis strain 510612     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 633491..645728
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMA510612_RS03280 (NMA510612_0718) - 633863..634327 (-) 465 WP_002246402.1 transcriptional regulator NrdR -
  NMA510612_RS03285 (NMA510612_0719) - 634356..635198 (-) 843 WP_002222980.1 class II glutamine amidotransferase -
  NMA510612_RS03290 (NMA510612_0720) aroB 635842..636921 (-) 1080 WP_002236907.1 3-dehydroquinate synthase -
  NMA510612_RS03295 (NMA510612_0721) - 637001..637513 (-) 513 WP_002222978.1 shikimate kinase -
  NMA510612_RS03300 (NMA510612_0725) pilQ 638491..640728 (-) 2238 WP_002250660.1 type IV pilus secretin PilQ Machinery gene
  NMA510612_RS03305 (NMA510612_0726) pilP 640747..641292 (-) 546 WP_002214522.1 pilus assembly protein PilP Machinery gene
  NMA510612_RS03310 (NMA510612_0727) - 641310..641957 (-) 648 WP_002214521.1 type 4a pilus biogenesis protein PilO -
  NMA510612_RS03315 (NMA510612_0728) pilN 641958..642557 (-) 600 WP_002214520.1 PilN domain-containing protein Machinery gene
  NMA510612_RS03320 (NMA510612_0729) pilM 642560..643675 (-) 1116 WP_002246401.1 type IV pilus biogenesis protein PilM -

Sequence

Protein


Download         Length: 745 a.a.        Molecular weight: 80205.52 Da        Isoelectric Point: 9.9818

>NTDB_id=120302 NMA510612_RS03300 WP_002250660.1 638491..640728(-) (pilQ) [Neisseria meningitidis strain 510612]
MNTKLTKIISGLFVATAAFQTASAGNITDIKVSSLPNKQKIVKVSFDKEIVNPTGFVTSSPARIALDFEQTGISMDQQVL
EYADPLLSKISAAQNSSRARLVLNLNKPGQYNTEVRGNKVWIFINESDDTVSAPARPAVKAAPAAPAKQQAAAPSTKSAV
SVSEPFTPAKQQAAAPFTESVVSVSAPFSPAKQQAAAPAKQTNIDFRKDGKNAGIIELAALGFAGQPDISQQHDHIIVTL
KNHTLPTTLQRSLDVADFKTPVQKVTLKRLNNDTQLIITTAGNWELVNKSAAPGYFTFQVLPKKQNLESGGVNNAPKTFT
GRKISLDFQDVEIRTILQILAKESGMNIVASDSVNGKMTLSLKDVPWDQALDLVMQARNLDMRQQGNIVNIAPRDELLAK
DKAFLQAEKDIADLGALYSQNFQLKYKNVEEFRSILRLDNADTTGNRNTLVSGRGSVLIDPATNTLIVTDTRSVIEKFRK
LIDELDVPAQQVMIEARIVEAADGFSRDLGVKFGATGKKKLKNDTSAFGWGVNSGFGGDDKWGAETKINLPITAAANSIS
LVRAISSGALNLELSASESLSKTKTLANPRVLTQNRKEAKIESGYEIPFTVTSIANGGSSTNTELKKAVLGLTVTPNITP
DGQIIMTVKINKDSPAQCASGNQTILCISTKNLNTQAMVENGGTLIVGGIYEEDNGNTLTKVPLLGDIPVIGNLFKTRGK
KTDRRELLIFITPRIMGTAGNSLRY

Nucleotide


Download         Length: 2238 bp        

>NTDB_id=120302 NMA510612_RS03300 WP_002250660.1 638491..640728(-) (pilQ) [Neisseria meningitidis strain 510612]
ATGAATACCAAACTGACAAAAATCATTTCCGGTCTCTTTGTCGCAACCGCCGCCTTTCAGACAGCATCGGCAGGAAACAT
TACAGACATCAAAGTTTCCTCCCTGCCCAACAAACAGAAAATCGTCAAAGTCAGCTTTGACAAAGAGATTGTCAACCCGA
CCGGCTTCGTAACCTCCTCACCGGCCCGCATCGCCTTGGACTTTGAACAAACCGGCATTTCCATGGATCAACAGGTACTC
GAATATGCCGATCCTCTGTTGAGCAAAATCAGTGCCGCACAAAACAGCAGCCGTGCGCGTCTGGTTCTGAATCTGAACAA
ACCGGGCCAATACAATACCGAAGTACGCGGGAACAAAGTTTGGATATTCATTAACGAATCGGACGATACCGTGTCCGCCC
CCGCACGCCCCGCCGTAAAAGCCGCGCCTGCCGCACCGGCAAAACAACAGGCTGCCGCACCGTCTACCAAGTCCGCAGTA
TCCGTATCCGAACCCTTTACCCCGGCAAAACAACAGGCTGCCGCACCGTTTACCGAGTCCGTAGTATCCGTATCCGCACC
GTTCAGCCCGGCAAAACAACAGGCGGCGGCACCAGCAAAACAAACCAATATCGATTTCCGCAAAGACGGCAAAAATGCCG
GCATTATCGAATTGGCGGCATTGGGCTTTGCCGGGCAGCCCGACATCAGCCAACAGCACGACCACATCATCGTTACGCTG
AAAAACCATACCCTGCCGACCACGCTCCAACGCAGTTTGGATGTGGCAGACTTTAAAACACCGGTTCAAAAGGTTACGCT
GAAACGCCTCAATAACGACACCCAGCTGATTATCACAACAGCCGGCAACTGGGAACTCGTCAACAAATCCGCCGCGCCCG
GATACTTTACCTTCCAAGTCCTGCCGAAAAAACAAAACCTCGAGTCAGGCGGCGTGAACAATGCGCCCAAAACCTTCACA
GGCCGGAAAATCTCCCTTGACTTCCAAGATGTCGAAATCCGCACCATCCTGCAGATTTTGGCAAAAGAATCCGGGATGAA
CATTGTTGCCAGCGACTCCGTCAACGGCAAAATGACCCTCTCCCTCAAAGACGTACCTTGGGATCAGGCTTTGGATTTGG
TTATGCAGGCACGCAACCTCGATATGCGCCAACAAGGGAACATCGTCAACATCGCGCCCCGCGACGAGCTGCTTGCCAAA
GACAAAGCCTTCTTACAGGCGGAAAAAGACATTGCCGATCTGGGCGCGCTGTATTCACAAAACTTCCAATTGAAATACAA
AAATGTGGAAGAATTCCGCAGCATCCTGCGTTTGGACAATGCCGACACAACCGGAAACCGCAATACGCTTGTCAGCGGCA
GGGGCAGCGTGCTGATCGATCCCGCCACCAATACCCTGATTGTTACCGATACCCGCAGCGTCATCGAAAAATTCCGCAAA
CTGATTGACGAATTGGACGTACCCGCGCAACAAGTGATGATTGAGGCGCGTATCGTCGAAGCGGCAGACGGCTTCTCGCG
CGATTTGGGCGTTAAATTCGGCGCGACAGGCAAGAAAAAGCTGAAAAATGATACAAGCGCATTCGGCTGGGGGGTAAACT
CCGGCTTCGGCGGCGACGATAAATGGGGGGCCGAAACCAAAATCAACCTGCCGATTACCGCTGCCGCAAACAGCATTTCG
CTGGTGCGCGCGATTTCCTCCGGTGCCTTGAATTTGGAATTGTCCGCATCCGAATCGCTTTCAAAAACCAAAACGCTTGC
CAATCCGCGCGTGCTGACCCAAAACCGCAAAGAGGCCAAAATCGAATCTGGTTACGAAATTCCTTTCACCGTAACCTCAA
TCGCGAACGGCGGCAGCAGCACGAACACGGAACTCAAAAAAGCCGTCTTGGGGCTGACCGTTACGCCGAACATCACGCCC
GACGGCCAAATCATTATGACCGTCAAAATCAACAAGGACTCGCCTGCGCAATGTGCCTCCGGTAATCAGACGATTCTGTG
TATTTCGACCAAAAACCTGAATACGCAGGCTATGGTTGAAAACGGCGGCACATTGATTGTCGGCGGTATTTATGAAGAAG
ACAACGGTAATACGCTGACCAAAGTCCCCCTGTTGGGCGACATCCCCGTTATCGGCAACCTCTTTAAAACACGCGGGAAA
AAAACCGACCGCCGCGAACTGCTGATTTTCATTACCCCGAGGATTATGGGTACGGCCGGCAACAGCCTGCGCTATTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(577-736)

Bacterial type II/III secretion system short domain (Secretin_N)

(420-491)

Secretin and TonB N terminus short domain (STN)

(347-392)

AMIN domain (AMIN)

(43-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB X5F782

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Neisseria meningitidis M1080

97.635

100

0.997
  pilQ Neisseria meningitidis MC58

96.619

100

0.997
  pilQ Neisseria gonorrhoeae strain FA1090

92.752

100

0.928

Multiple sequence alignment