Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilW   Type   Machinery gene
Locus tag   RR32_RS01735 Genome accession   NZ_CP010368
Coordinates   374736..375773 (+) Length   345 a.a.
NCBI ID   WP_002051737.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 369736..380773
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS19855 - 371396..371527 (-) 132 WP_102990545.1 hypothetical protein -
  RR32_RS01710 (RR32_01715) rpoZ 371566..371844 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RR32_RS01715 (RR32_01720) gmk 371917..372546 (-) 630 WP_002051739.1 guanylate kinase -
  RR32_RS01720 (RR32_01725) ispH 372669..373619 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RR32_RS01725 (RR32_01730) fimU 373788..374237 (+) 450 WP_025467929.1 GspH/FimT family pseudopilin Machinery gene
  RR32_RS01730 (RR32_01735) pilV 374234..374734 (+) 501 WP_080961310.1 type IV pilus modification protein PilV Machinery gene
  RR32_RS01735 (RR32_01740) pilW 374736..375773 (+) 1038 WP_002051737.1 PilW family protein Machinery gene
  RR32_RS01740 (RR32_01745) - 375770..376552 (+) 783 WP_002051645.1 pilus assembly PilX family protein -
  RR32_RS01745 (RR32_01750) - 376568..380242 (+) 3675 WP_039246152.1 PilC/PilY family type IV pilus protein -
  RR32_RS01750 (RR32_01755) comE 380256..380732 (+) 477 WP_039246155.1 type IV pilin protein Machinery gene

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 37299.18 Da        Isoelectric Point: 6.9578

>NTDB_id=120217 RR32_RS01735 WP_002051737.1 374736..375773(+) (pilW) [Acinetobacter nosocomialis strain 6411]
MKKNQGFTLIELILSLALGLIITAAAILLFLSSQKSLSMQIGVSDVQDNANFGLNYLTQDIRLANLNNPKAVINDQTAYG
GIVLTSAVNSAKDAANEPLSNLYKTIVGVTASTNLLSRSQGDSVGSGNTWTGASNVQSNGSDIASDQLVIQYVPQYTIDT
KGTATQADDEYIGGTDCEGNNLNFPLASGRQVIVERYFLRKDANNTTDEPNQPLALACDAGYYPLTGNPTAITRYGDAGE
IIMKRVDYFRVLLNVQGSSGRRYISIHDYLSLTAPRPRIVSVQIGLLTRSLQPVGAEVAIKDDQKFSVLDQTIIVKKPTN
STKKYVRQVISQTIALRNVIGERGE

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=120217 RR32_RS01735 WP_002051737.1 374736..375773(+) (pilW) [Acinetobacter nosocomialis strain 6411]
ATGAAAAAAAATCAGGGGTTTACATTAATCGAACTCATACTTTCGTTAGCTTTAGGTCTGATAATTACAGCCGCTGCAAT
ATTATTGTTTTTGTCTAGTCAAAAAAGTTTATCAATGCAGATAGGTGTTTCCGATGTACAGGATAATGCTAATTTTGGGC
TTAACTATTTAACCCAAGATATTCGCCTTGCGAATTTAAATAATCCTAAAGCAGTTATTAATGATCAAACTGCGTACGGC
GGTATTGTCTTAACCTCTGCAGTTAACTCAGCTAAAGATGCTGCTAATGAGCCTCTTAGTAATCTTTATAAAACCATTGT
TGGTGTAACAGCCAGTACTAATTTACTTTCACGCAGTCAAGGCGATAGTGTTGGTAGTGGTAATACTTGGACTGGAGCAT
CAAACGTCCAAAGTAATGGAAGTGATATTGCCAGTGATCAACTCGTTATTCAATATGTACCGCAATATACAATTGATACA
AAAGGTACAGCAACTCAAGCTGACGATGAATATATAGGTGGTACAGATTGCGAAGGAAACAATTTGAATTTTCCTCTTGC
AAGTGGACGCCAAGTTATAGTTGAACGATATTTTCTACGTAAAGATGCTAATAACACTACTGATGAACCCAATCAACCCT
TAGCACTAGCTTGTGATGCCGGTTATTACCCATTAACGGGTAATCCAACTGCTATCACACGTTATGGGGATGCGGGTGAA
ATTATAATGAAACGCGTAGATTATTTCCGAGTTTTACTGAATGTTCAGGGGAGTTCAGGGCGACGTTATATTTCAATACA
TGATTATTTGAGTTTAACAGCTCCTCGTCCACGTATTGTTTCGGTACAAATTGGATTATTAACTCGTTCATTGCAACCAG
TCGGTGCAGAAGTAGCAATTAAAGATGATCAAAAATTTTCAGTATTGGATCAAACGATTATAGTTAAAAAGCCTACAAAT
TCTACAAAAAAATATGTGCGGCAAGTGATATCACAAACCATCGCTTTACGTAATGTAATCGGGGAGCGTGGTGAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)

Type IV Pilus-assembly protein W (PilW)

(197-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilW Acinetobacter baumannii D1279779

38.655

100

0.4

Multiple sequence alignment