Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimU   Type   Machinery gene
Locus tag   RR32_RS01725 Genome accession   NZ_CP010368
Coordinates   373788..374237 (+) Length   149 a.a.
NCBI ID   WP_025467929.1    Uniprot ID   -
Organism   Acinetobacter nosocomialis strain 6411     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 368788..379237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RR32_RS01705 (RR32_01710) - 369252..371357 (-) 2106 WP_004711681.1 RelA/SpoT family protein -
  RR32_RS19855 - 371396..371527 (-) 132 WP_102990545.1 hypothetical protein -
  RR32_RS01710 (RR32_01715) rpoZ 371566..371844 (-) 279 WP_000135049.1 DNA-directed RNA polymerase subunit omega -
  RR32_RS01715 (RR32_01720) gmk 371917..372546 (-) 630 WP_002051739.1 guanylate kinase -
  RR32_RS01720 (RR32_01725) ispH 372669..373619 (+) 951 WP_002051768.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  RR32_RS01725 (RR32_01730) fimU 373788..374237 (+) 450 WP_025467929.1 GspH/FimT family pseudopilin Machinery gene
  RR32_RS01730 (RR32_01735) pilV 374234..374734 (+) 501 WP_080961310.1 type IV pilus modification protein PilV Machinery gene
  RR32_RS01735 (RR32_01740) pilW 374736..375773 (+) 1038 WP_002051737.1 PilW family protein Machinery gene
  RR32_RS01740 (RR32_01745) - 375770..376552 (+) 783 WP_002051645.1 pilus assembly PilX family protein -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16077.56 Da        Isoelectric Point: 8.5211

>NTDB_id=120215 RR32_RS01725 WP_025467929.1 373788..374237(+) (fimU) [Acinetobacter nosocomialis strain 6411]
MRGITPQEGFTLVELIVTIAVMAIIAVMAVPMFGDMLNNQNLNRSSEDLVSSINQARMKAIVERRQVKVQLNSTYVADSD
NQINWVPSGKAQLKTGSNTSIVFLMSGLVKDATGDTTFEICNTASGNKSKIINVSRMGSIQSITMGTCS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=120215 RR32_RS01725 WP_025467929.1 373788..374237(+) (fimU) [Acinetobacter nosocomialis strain 6411]
ATGAGGGGAATTACTCCGCAAGAAGGGTTCACCTTAGTGGAACTCATCGTAACAATTGCAGTCATGGCTATTATTGCTGT
GATGGCTGTACCAATGTTTGGGGATATGTTGAATAATCAAAATTTGAATAGAAGTTCAGAAGATCTAGTTTCAAGTATAA
ATCAGGCACGTATGAAAGCTATAGTCGAGCGTAGACAAGTAAAAGTGCAATTAAATTCTACGTATGTGGCAGATAGTGAT
AATCAAATTAATTGGGTACCAAGCGGAAAAGCTCAATTAAAAACGGGATCTAATACTTCTATAGTATTTTTAATGTCCGG
TTTGGTAAAAGATGCAACCGGAGATACAACTTTTGAAATTTGTAATACGGCATCTGGTAATAAATCAAAAATTATTAATG
TTTCAAGAATGGGATCAATTCAGTCAATCACAATGGGGACATGTTCATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(7-29)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimU Acinetobacter baumannii D1279779

38.365

100

0.409

Multiple sequence alignment