Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   E1470_RS18105 Genome accession   NZ_CP010344
Coordinates   3636292..3636924 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli ECC-1470     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3631292..3641924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E1470_RS18075 (E1470_c34760) yheS 3631461..3633374 (+) 1914 WP_000634798.1 ABC transporter ATP-binding protein -
  E1470_RS18080 (E1470_c34770) yheT 3633374..3634396 (+) 1023 WP_000057402.1 hydrolase -
  E1470_RS18085 (E1470_c34780) yheU 3634390..3634608 (+) 219 WP_000907085.1 YheU family protein -
  E1470_RS18090 (E1470_c34790) prkB 3634662..3635531 (+) 870 WP_001274680.1 phosphoribulokinase -
  E1470_RS18095 (E1470_c34800) yhfA 3635586..3635990 (-) 405 WP_001148908.1 OsmC family protein -
  E1470_RS18105 (E1470_c34810) crp 3636292..3636924 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  E1470_RS18110 (E1470_c34820) yhfK 3636975..3639065 (+) 2091 WP_001442307.1 YccS/YhfK family putative transporter -
  E1470_RS18115 (E1470_c34830) argD 3639132..3640352 (-) 1221 WP_000963785.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  E1470_RS18120 (E1470_c34840) pabA 3640438..3641001 (-) 564 WP_000601850.1 aminodeoxychorismate synthase component 2 -
  E1470_RS18125 (E1470_c34850) fic 3641033..3641635 (-) 603 WP_001280624.1 putative adenosine monophosphate-protein transferase Fic -
  E1470_RS18130 (E1470_c34860) yhfG 3641625..3641792 (-) 168 WP_000736860.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=120178 E1470_RS18105 WP_000242755.1 3636292..3636924(+) (crp) [Escherichia coli ECC-1470]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=120178 E1470_RS18105 WP_000242755.1 3636292..3636924(+) (crp) [Escherichia coli ECC-1470]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467