Detailed information    

insolico Bioinformatically predicted

Overview

Name   lytF   Type   Regulator
Locus tag   GBS85147_RS08430 Genome accession   NZ_CP010319
Coordinates   1685607..1686116 (-) Length   169 a.a.
NCBI ID   WP_001883456.1    Uniprot ID   -
Organism   Streptococcus agalactiae strain GBS85147     
Function   cell lysis (predicted from homology)   
Cell lysis

Genomic Context

Location: 1680607..1691116
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBS85147_RS08405 (GBS85147_1704) tsaD 1681116..1682126 (-) 1011 WP_000655084.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD -
  GBS85147_RS08410 (GBS85147_1705) rimI 1682202..1682609 (-) 408 WP_000445943.1 ribosomal protein S18-alanine N-acetyltransferase -
  GBS85147_RS08415 (GBS85147_1706) tsaB 1682611..1683303 (-) 693 WP_000978604.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB -
  GBS85147_RS08420 (GBS85147_1707) - 1683482..1683712 (+) 231 WP_000639570.1 DNA-dependent RNA polymerase subunit epsilon -
  GBS85147_RS08425 (GBS85147_1708) rnjA 1683766..1685445 (+) 1680 WP_000065498.1 ribonuclease J1 -
  GBS85147_RS08430 (GBS85147_1709) lytF 1685607..1686116 (-) 510 WP_001883456.1 CHAP domain-containing protein Regulator
  GBS85147_RS08435 (GBS85147_1710) glnA 1686264..1687610 (-) 1347 WP_000156225.1 type I glutamate--ammonia ligase -
  GBS85147_RS08440 (GBS85147_1711) - 1687644..1688015 (-) 372 WP_000664338.1 MerR family transcriptional regulator -
  GBS85147_RS08445 (GBS85147_1712) - 1688095..1688634 (-) 540 WP_000854121.1 aromatic acid exporter family protein -
  GBS85147_RS08450 (GBS85147_1713) - 1688897..1690093 (-) 1197 WP_001096753.1 phosphoglycerate kinase -
  GBS85147_RS08455 (GBS85147_1714) - 1690228..1691097 (-) 870 WP_000858923.1 5'-nucleotidase, lipoprotein e(P4) family -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18360.32 Da        Isoelectric Point: 4.4055

>NTDB_id=120110 GBS85147_RS08430 WP_001883456.1 1685607..1686116(-) (lytF) [Streptococcus agalactiae strain GBS85147]
MEENMNIKQLKSKTMLGTVALVSAFSFASTNADVNTYNYAVDVDYLASAEEIAQAHPASNTFPLGQCTWGVKEMATWAGN
WWGNGGDWAASAASAGYTVGTQPRVGSIVCWTDGSYGHVAYVTAVDPVTNKIQVLESNYAGHQWIDNYRGWFDPQNTVTP
GVVSYIYPN

Nucleotide


Download         Length: 510 bp        

>NTDB_id=120110 GBS85147_RS08430 WP_001883456.1 1685607..1686116(-) (lytF) [Streptococcus agalactiae strain GBS85147]
ATGGAGGAAAACATGAACATAAAACAATTAAAGTCTAAAACAATGCTTGGAACAGTGGCTTTGGTGTCCGCTTTTTCATT
TGCTTCAACAAATGCAGATGTGAATACATATAACTATGCAGTAGATGTAGACTATCTAGCAAGTGCGGAGGAAATTGCTC
AAGCACATCCAGCTAGTAATACGTTTCCACTAGGTCAATGCACATGGGGTGTAAAGGAGATGGCAACATGGGCAGGTAAC
TGGTGGGGAAACGGTGGTGATTGGGCTGCGAGCGCCGCATCAGCTGGTTATACAGTAGGAACACAACCGCGCGTGGGTTC
TATCGTATGTTGGACTGATGGTAGTTATGGACATGTGGCTTATGTTACAGCTGTAGATCCTGTCACTAATAAAATTCAGG
TTTTAGAATCTAATTATGCAGGTCATCAATGGATTGATAATTATCGTGGTTGGTTTGATCCACAAAATACAGTGACACCA
GGGGTAGTTAGCTACATTTATCCGAATTAA

Domains

Predicted by InterProScan.

CHAP domain (CHAP)

(60-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  lytF Streptococcus gordonii strain NCTC7865

57.576

78.107

0.45
  lytF Streptococcus gordonii str. Challis substr. CH1

57.576

78.107

0.45
  SMU.836 Streptococcus mutans UA159

55.118

75.148

0.414

Multiple sequence alignment