Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   AC789_RS18830 Genome accession   NZ_CP010315
Coordinates   3794181..3794813 (+) Length   210 a.a.
NCBI ID   WP_000242755.1    Uniprot ID   A0A1C4FZU4
Organism   Escherichia coli strain 789     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3789181..3799813
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AC789_RS18800 (AC789_1c37210) yheS 3789350..3791263 (+) 1914 WP_000634789.1 ABC transporter ATP-binding protein -
  AC789_RS18805 (AC789_1c37220) yheT 3791263..3792285 (+) 1023 WP_000057380.1 hydrolase -
  AC789_RS18810 (AC789_1c37230) yheU 3792279..3792497 (+) 219 WP_000907085.1 YheU family protein -
  AC789_RS18815 (AC789_1c37240) prkB 3792551..3793420 (+) 870 WP_001274680.1 phosphoribulokinase -
  AC789_RS18820 (AC789_1c37250) yhfA 3793475..3793879 (-) 405 WP_001148908.1 OsmC family protein -
  AC789_RS18830 (AC789_1c37260) crp 3794181..3794813 (+) 633 WP_000242755.1 cAMP-activated global transcriptional regulator CRP Regulator
  AC789_RS18835 (AC789_1c37270) yhfK 3794864..3796954 (+) 2091 WP_001309001.1 YccS/YhfK family putative transporter -
  AC789_RS18840 (AC789_1c37280) argD 3797021..3798241 (-) 1221 WP_000963792.1 bifunctional acetylornithine/succinyldiaminopimelate transaminase -
  AC789_RS18845 (AC789_1c37290) pabA 3798327..3798890 (-) 564 WP_000601850.1 aminodeoxychorismate synthase component 2 -
  AC789_RS18850 (AC789_1c37300) fic 3798922..3799524 (-) 603 WP_001280641.1 putative adenosine monophosphate-protein transferase Fic -
  AC789_RS18855 (AC789_1c37310) yhfG 3799514..3799681 (-) 168 WP_000736862.1 YhfG family protein -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 23640.43 Da        Isoelectric Point: 8.2710

>NTDB_id=119994 AC789_RS18830 WP_000242755.1 3794181..3794813(+) (crp) [Escherichia coli strain 789]
MVLGKPQTDPTLEWFLSHCHIHKYPSKSTLIHQGEKAETLYYIVKGSVAVLIKDEEGKEMILSYLNQGDFIGELGLFEEG
QERSAWVRAKTACEVAEISYKKFRQLIQVNPDILMRLSAQMARRLQVTSEKVGNLAFLDVTGRIAQTLLNLAKQPDAMTH
PDGMQIKITRQEIGQIVGCSRETVGRILKMLEDQNLISAHGKTIVVYGTR

Nucleotide


Download         Length: 633 bp        

>NTDB_id=119994 AC789_RS18830 WP_000242755.1 3794181..3794813(+) (crp) [Escherichia coli strain 789]
ATGGTGCTTGGCAAACCGCAAACAGACCCGACTCTCGAATGGTTCTTGTCTCATTGCCACATTCATAAGTACCCATCCAA
GAGCACGCTTATTCACCAGGGTGAAAAAGCGGAAACGCTGTACTACATCGTTAAAGGCTCTGTGGCAGTGCTGATCAAAG
ACGAAGAGGGTAAAGAAATGATCCTCTCCTATCTGAATCAGGGTGATTTTATTGGCGAACTGGGCCTGTTTGAAGAGGGC
CAGGAACGTAGCGCATGGGTACGTGCGAAAACCGCCTGTGAAGTGGCTGAAATTTCGTACAAAAAATTTCGCCAATTGAT
TCAGGTAAACCCGGACATTCTGATGCGTCTGTCTGCACAGATGGCGCGTCGTCTGCAAGTCACTTCAGAGAAAGTGGGCA
ACCTGGCGTTCCTCGACGTGACGGGCCGCATTGCACAGACTCTGCTGAACCTGGCAAAACAACCAGATGCTATGACTCAC
CCGGACGGTATGCAAATCAAAATTACCCGTCAGGAAATCGGTCAGATTGTCGGCTGTTCTCGTGAAACCGTGGGACGCAT
TCTGAAGATGCTGGAAGATCAGAACCTGATCTCCGCACACGGTAAAACCATCGTCGTTTACGGCACTCGTTAA

Domains

Predicted by InterProScan.

Cyclic nucleotide-binding domain (cNMP_binding)

(23-109)

Crp-like helix-turn-helix domain (HTH_Crp_2)

(142-206)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1C4FZU4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

95.714

100

0.957
  crp Haemophilus influenzae Rd KW20

77.941

97.143

0.757
  crp Acinetobacter baumannii D1279779

47.343

98.571

0.467

Multiple sequence alignment