Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   NTHI723_RS03340 Genome accession   NZ_CP007472
Coordinates   695591..696310 (-) Length   239 a.a.
NCBI ID   WP_011272300.1    Uniprot ID   Q4QLW9
Organism   Haemophilus influenzae strain 723     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 690591..701310
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI723_RS03320 (NTHI723_00670) nrdR 690716..691165 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  NTHI723_RS03325 (NTHI723_00671) recC 691220..694585 (-) 3366 WP_044364474.1 exodeoxyribonuclease V subunit gamma -
  NTHI723_RS03330 (NTHI723_00672) comQ 694631..694918 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  NTHI723_RS03335 (NTHI723_00673) comP 694911..695594 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  NTHI723_RS03340 (NTHI723_00674) comO 695591..696310 (-) 720 WP_011272300.1 type II secretion system protein J Machinery gene
  NTHI723_RS03345 (NTHI723_00675) comN 696310..696822 (-) 513 WP_011272299.1 type II secretion system protein Machinery gene
  NTHI723_RS03350 (NTHI723_00676) suhB 697022..697834 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  NTHI723_RS03355 (NTHI723_00677) nrfE 697943..699850 (+) 1908 WP_011272297.1 heme lyase NrfEFG subunit NrfE -
  NTHI723_RS03360 (NTHI723_00678) - 699850..700380 (+) 531 WP_005688388.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 239 a.a.        Molecular weight: 26922.29 Da        Isoelectric Point: 9.3761

>NTDB_id=119763 NTHI723_RS03340 WP_011272300.1 695591..696310(-) (comO) [Haemophilus influenzae strain 723]
MMKTLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRILQLIGKDLRRLGFRALNAKLTESNL
FLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKNGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQKQ

Nucleotide


Download         Length: 720 bp        

>NTDB_id=119763 NTHI723_RS03340 WP_011272300.1 695591..696310(-) (comO) [Haemophilus influenzae strain 723]
ATGATGAAAACATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTGGCTTTGTCTTCTTTATTGCTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACACAAAACCAACAAATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAATATTACAGTTAATAGGCAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TTTTTATTTGAATTAGATGAACAAGGCACAGCCATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGTAAAGGTTCGCCGAAAACCTGTATGAAAAATGGGAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTTGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACGTGTAAACGTGCTTTTCAACAAACCGCTTGCAACGCTGGGGGAGGTTGGGCAGA
TTTATTAGATAACAACGAATATGAAATTACTAGGCTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGT
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACCTCCCTTGTCGTTGCTCTTTGGAATCAAAAACAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q4QLW9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

97.059

99.582

0.967

Multiple sequence alignment