Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   NTHI723_RS03330 Genome accession   NZ_CP007472
Coordinates   694631..694918 (-) Length   95 a.a.
NCBI ID   WP_021034778.1    Uniprot ID   -
Organism   Haemophilus influenzae strain 723     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 689631..699918
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NTHI723_RS03320 (NTHI723_00670) nrdR 690716..691165 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  NTHI723_RS03325 (NTHI723_00671) recC 691220..694585 (-) 3366 WP_044364474.1 exodeoxyribonuclease V subunit gamma -
  NTHI723_RS03330 (NTHI723_00672) comQ 694631..694918 (-) 288 WP_021034778.1 DUF5374 domain-containing protein Machinery gene
  NTHI723_RS03335 (NTHI723_00673) comP 694911..695594 (-) 684 WP_011272301.1 DUF2572 family protein Machinery gene
  NTHI723_RS03340 (NTHI723_00674) comO 695591..696310 (-) 720 WP_011272300.1 type II secretion system protein J Machinery gene
  NTHI723_RS03345 (NTHI723_00675) comN 696310..696822 (-) 513 WP_011272299.1 type II secretion system protein Machinery gene
  NTHI723_RS03350 (NTHI723_00676) suhB 697022..697834 (+) 813 WP_011272298.1 inositol-1-monophosphatase -
  NTHI723_RS03355 (NTHI723_00677) nrfE 697943..699850 (+) 1908 WP_011272297.1 heme lyase NrfEFG subunit NrfE -

Sequence

Protein


Download         Length: 95 a.a.        Molecular weight: 11057.89 Da        Isoelectric Point: 9.2201

>NTDB_id=119761 NTHI723_RS03330 WP_021034778.1 694631..694918(-) (comQ) [Haemophilus influenzae strain 723]
MNKGMSLITLLFSLALFSVLFLVFNQWTAEQRKSAVKIYQDFQATQIAENQAQRQFLGLACEQLIQQNGLTFRIRCENER
IIVRYPTSEILIKTQ

Nucleotide


Download         Length: 288 bp        

>NTDB_id=119761 NTHI723_RS03330 WP_021034778.1 694631..694918(-) (comQ) [Haemophilus influenzae strain 723]
ATGAATAAAGGAATGTCTCTTATTACATTGTTATTTTCTTTAGCTTTATTTAGCGTTTTATTTCTTGTTTTTAATCAATG
GACGGCAGAACAGCGAAAAAGTGCGGTAAAAATTTATCAAGATTTTCAGGCAACACAAATTGCAGAGAATCAAGCTCAAC
GCCAATTTTTAGGGTTAGCTTGTGAACAATTGATACAACAAAATGGCTTAACTTTTCGTATTCGATGTGAAAATGAACGC
ATTATTGTGCGTTATCCTACGAGTGAAATTTTGATAAAAACTCAGTAA

Domains

Predicted by InterproScan.

Family of unknown function (DUF5374) (DUF5374)

(53-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

92.632

100

0.926

Multiple sequence alignment