Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A419_RS00650 Genome accession   NZ_CP007461
Coordinates   108955..109437 (+) Length   160 a.a.
NCBI ID   WP_069007985.1    Uniprot ID   -
Organism   Listeria monocytogenes serotype 4b str. 02-1792     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 103955..114437
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A419_RS00580 (A419_0114) - 104203..105177 (+) 975 WP_069007987.1 phage replisome organizer N-terminal domain-containing protein -
  A419_RS00585 (A419_0115) - 105174..105425 (+) 252 WP_021496290.1 hypothetical protein -
  A419_RS00590 (A419_0116) - 105454..105723 (+) 270 WP_021496930.1 hypothetical protein -
  A419_RS00595 (A419_0117) - 105720..106112 (+) 393 WP_021496931.1 hypothetical protein -
  A419_RS00600 (A419_0118) - 106109..106648 (+) 540 WP_021496932.1 DUF1642 domain-containing protein -
  A419_RS15245 - 106666..106743 (+) 78 Protein_119 hypothetical protein -
  A419_RS15250 (A419_0119) - 106767..107165 (+) 399 WP_021496934.1 hypothetical protein -
  A419_RS00615 (A419_0120) - 107168..107365 (+) 198 WP_021496935.1 hypothetical protein -
  A419_RS00620 (A419_0121) - 107362..107745 (+) 384 WP_021496936.1 YopX family protein -
  A419_RS00625 (A419_0122) - 107742..107957 (+) 216 WP_069007986.1 hypothetical protein -
  A419_RS00630 (A419_0123) - 107954..108130 (+) 177 WP_003731703.1 hypothetical protein -
  A419_RS00635 - 108130..108315 (+) 186 WP_003743374.1 hypothetical protein -
  A419_RS00640 (A419_0124) - 108316..108543 (+) 228 WP_003743375.1 ASCH/PUA domain-containing protein -
  A419_RS00645 (A419_0125) - 108554..108955 (+) 402 WP_034172803.1 hypothetical protein -
  A419_RS00650 (A419_0126) ssbA 108955..109437 (+) 483 WP_069007985.1 single-stranded DNA-binding protein Machinery gene
  A419_RS00655 - 109456..109647 (+) 192 WP_003743380.1 hypothetical protein -
  A419_RS00660 (A419_0127) - 109592..109996 (+) 405 WP_031541233.1 DUF1064 domain-containing protein -
  A419_RS00665 (A419_0128) - 110000..110383 (+) 384 WP_003743384.1 DUF2481 family protein -
  A419_RS15290 (A419_0129) - 110376..110501 (+) 126 WP_021496281.1 hypothetical protein -
  A419_RS00670 (A419_0130) - 110512..110676 (+) 165 WP_003727776.1 hypothetical protein -
  A419_RS00675 (A419_0131) - 110695..111129 (+) 435 WP_003743388.1 ArpU family phage packaging/lysis transcriptional regulator -
  A419_RS00680 (A419_0132) - 111493..112212 (+) 720 WP_058833461.1 hypothetical protein -
  A419_RS00685 (A419_0133) - 112278..112820 (+) 543 WP_003743392.1 terminase small subunit -
  A419_RS00690 (A419_0134) - 112789..114120 (+) 1332 WP_020830818.1 PBSX family phage terminase large subunit -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17804.62 Da        Isoelectric Point: 4.8008

>NTDB_id=119609 A419_RS00650 WP_069007985.1 108955..109437(+) (ssbA) [Listeria monocytogenes serotype 4b str. 02-1792]
MMNRVVLVGRLTKDPELRYTPAGLAVATFTLAVNRPFKNAQGEQEADFINCVVWRKPAENVANFLKKGSMAGVDGRIQTR
NYEDNDGKRVFVTEVVAESVQFLEPKNNNAEGATSNNYQNQANYSNNNQTSSYRADTSQKSDSFANEGKAIDINEDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=119609 A419_RS00650 WP_069007985.1 108955..109437(+) (ssbA) [Listeria monocytogenes serotype 4b str. 02-1792]
ATGATGAATCGTGTAGTACTTGTAGGACGATTAACGAAAGACCCTGAATTACGTTACACTCCAGCTGGATTAGCTGTTGC
GACTTTTACATTAGCAGTAAATCGCCCATTTAAAAATGCACAAGGAGAACAAGAAGCCGATTTTATTAATTGTGTTGTTT
GGCGTAAACCAGCGGAAAATGTTGCTAATTTCTTGAAAAAAGGAAGCATGGCGGGCGTTGATGGACGAATACAGACTCGA
AATTATGAGGACAACGACGGTAAACGCGTTTTTGTTACAGAAGTAGTTGCTGAATCAGTTCAATTCTTAGAGCCTAAAAA
TAACAACGCAGAAGGCGCTACATCAAATAATTACCAAAACCAAGCTAATTATTCAAATAACAACCAAACAAGCTCATATC
GAGCGGATACGAGCCAGAAGAGCGATTCATTTGCAAATGAGGGCAAGGCGATTGATATCAATGAAGATGATTTGCCATTT
TGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

63.372

100

0.681
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

66.25

0.431

Multiple sequence alignment