Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   CH52_RS09955 Genome accession   NZ_CP007454
Coordinates   1951774..1952403 (+) Length   209 a.a.
NCBI ID   WP_000153535.1    Uniprot ID   W8TS97
Organism   Staphylococcus aureus strain 502A isolate RN6607     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1946774..1957403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH52_RS09925 (CH52_09480) - 1947150..1948136 (-) 987 WP_000999717.1 FUSC family protein -
  CH52_RS09935 (CH52_09485) map 1948667..1949425 (+) 759 WP_000636142.1 type I methionyl aminopeptidase -
  CH52_RS09940 (CH52_09490) - 1949642..1950028 (+) 387 WP_001110179.1 hypothetical protein -
  CH52_RS09945 (CH52_09495) liaF 1950043..1950744 (+) 702 WP_000149064.1 cell wall-active antibiotics response protein LiaF -
  CH52_RS09950 (CH52_09500) vraS 1950741..1951784 (+) 1044 WP_001017131.1 sensor histidine kinase Regulator
  CH52_RS09955 (CH52_09505) vraR 1951774..1952403 (+) 630 WP_000153535.1 two-component system response regulator VraR Regulator
  CH52_RS09960 (CH52_09510) - 1952516..1953733 (-) 1218 WP_000037075.1 YihY/virulence factor BrkB family protein -
  CH52_RS09965 (CH52_09515) - 1954011..1954286 (-) 276 WP_000428172.1 YtxH domain-containing protein -
  CH52_RS09970 (CH52_09520) - 1954293..1954757 (-) 465 WP_000228666.1 low molecular weight protein-tyrosine-phosphatase -
  CH52_RS09975 (CH52_09525) - 1954904..1955104 (+) 201 WP_000180460.1 DUF1128 family protein -
  CH52_RS09980 (CH52_09530) - 1955107..1956363 (+) 1257 WP_001795108.1 aminopeptidase -
  CH52_RS09985 (CH52_09535) - 1956453..1956983 (+) 531 WP_000184383.1 acyl-CoA thioesterase -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23559.32 Da        Isoelectric Point: 5.3935

>NTDB_id=119493 CH52_RS09955 WP_000153535.1 1951774..1952403(+) (vraR) [Staphylococcus aureus strain 502A isolate RN6607]
MTIKVLFVDDHEMVRIGISSYLSTQSDIEVVGEGASGKEAIAKAHELKPDLILMDLLMEDMDGVEATTQIKKDLPQIKVL
MLTSFIEDKEVYRALDAGVDSYILKTTSAKDIADAVRKTSRGESVFEPEVLVKMRNRMKKRAELYEMLTEREMEILLLIA
KGYSNQEIASASHITIKTVKTHVSNILSKLEVQDRTQAVIYAFQHNLIQ

Nucleotide


Download         Length: 630 bp        

>NTDB_id=119493 CH52_RS09955 WP_000153535.1 1951774..1952403(+) (vraR) [Staphylococcus aureus strain 502A isolate RN6607]
ATGACGATTAAAGTATTGTTTGTGGATGATCATGAAATGGTACGTATAGGAATTTCAAGTTATCTATCAACGCAAAGTGA
TATTGAAGTAGTTGGTGAAGGCGCTTCTGGTAAAGAAGCAATTGCCAAAGCCCATGAGTTGAAGCCAGATTTAATTTTAA
TGGATTTACTTATGGAAGACATGGATGGTGTAGAAGCGACGACTCAGATTAAAAAAGATTTACCGCAAATTAAAGTATTA
ATGTTAACTAGTTTTATTGAAGATAAAGAGGTATATCGTGCATTAGATGCAGGTGTCGATAGTTACATTTTAAAAACAAC
AAGTGCAAAAGATATCGCCGATGCAGTTCGTAAAACTTCTAGAGGAGAATCTGTTTTTGAACCGGAAGTTTTAGTGAAAA
TGCGTAACCGTATGAAAAAGCGCGCAGAGTTATATGAAATGCTTACAGAACGAGAAATGGAAATATTATTATTGATTGCG
AAAGGTTACTCAAATCAAGAAATTGCTAGTGCATCGCATATTACTATTAAAACGGTTAAGACACATGTGAGTAACATTTT
AAGTAAGTTAGAAGTGCAAGATAGAACACAAGCTGTCATCTATGCATTCCAACATAATTTAATTCAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(5-116)

Bacterial regulatory proteins, luxR family (GerE)

(147-202)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB W8TS97

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

100

100

1
  degU Bacillus subtilis subsp. subtilis str. 168

34.821

100

0.373

Multiple sequence alignment