Detailed information NTG0119350

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: CH92_RS06655
• Genome accession: NZ_CP007441
• Coordinates: 1439639..1441864 (+)
• Length: 741 a.a.
• NCBI ID: WP_025241001.1
• Uniprot ID: W8RRZ7
• Organism: Stutzerimonas stutzeri strain 28a24
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1434639..1446864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CH92_RS06625 (CH92_06765)	-	1434749..1435054 (-)	306	WP_025240995.1	hypothetical protein	-
CH92_RS06630 (CH92_06770)	-	1435057..1435629 (-)	573	WP_025240996.1	PilZ domain-containing protein	-
CH92_RS06635 (CH92_06775)	-	1435730..1436977 (+)	1248	WP_025240997.1	lipoprotein-releasing ABC transporter permease subunit	-
CH92_RS06640 (CH92_06780)	lolD	1436985..1437683 (+)	699	WP_025240998.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
CH92_RS06645 (CH92_06785)	-	1437683..1438930 (+)	1248	WP_025240999.1	lipoprotein-releasing ABC transporter permease subunit	-
CH92_RS06650 (CH92_06790)	-	1438941..1439456 (-)	516	WP_025241000.1	DUF2062 domain-containing protein	-
CH92_RS06655 (CH92_06795)	comA	1439639..1441864 (+)	2226	WP_025241001.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
CH92_RS06660 (CH92_06800)	-	1441936..1442568 (+)	633	WP_025241002.1	MotA/TolQ/ExbB proton channel family protein	-
CH92_RS06665 (CH92_06805)	-	1442565..1442993 (+)	429	WP_025241003.1	biopolymer transporter ExbD	-
CH92_RS06670 (CH92_06810)	lpxK	1442993..1443997 (+)	1005	WP_025241004.1	tetraacyldisaccharide 4'-kinase	-
CH92_RS06675 (CH92_06815)	-	1444044..1444229 (+)	186	WP_025241005.1	Trm112 family protein	-
CH92_RS06680 (CH92_06820)	kdsB	1444226..1444990 (+)	765	WP_025241006.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
CH92_RS06685 (CH92_06825)	-	1444993..1445457 (+)	465	WP_025241007.1	low molecular weight protein-tyrosine-phosphatase	-
CH92_RS06690 (CH92_06830)	murB	1445454..1446473 (+)	1020	WP_025241008.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 741 a.a.
• Molecular weight: 80702.83 Da
• Isoelectric Point: 8.6144

>NTDB_id=119350 CH92_RS06655 WP_025241001.1 1439639..1441864(+) (comA) [Stutzerimonas stutzeri strain 28a24]
MRTAMLALAAGLLLLRFLPQLPPLSALPFVLVTGLVLLPFRWRALGCFLLGLGWACLSAHWVLSDRLPTELDGRTFWLEG
RVAGLPDVRGGVVRFELVDVSSRHSGLPSRMRLAWYGGPMIQAGERWRLAAKLKRPRGLVNPHPFDYEAWLLARRIGASG
TIKAGERVAFADGNLAWRDRLRQRLMAVDAQGRSGAIAALVVGDDSGLSTSDWRILQDTGTVHLMVISGQHVGMLAGLLY
GLVALMARWGIWPRRIAWLPCACGLALFGALAYGWLAGFEVPVQRASVMVALVLLWRLRFRHLGVWLPLLVALDGVLLID
PLVSLQSGFWLSFLAVALLALVFRGRLGSWGWWQALGRAQWSMSLGLLPVLLALGLPVSLSSPIANLFAVPLVSMLIVPL
SLLGTSLLWLPGVGECLLWLAGGLLALLFDTLRWLADWQSAWLPASLPIWGWVLVALGMLLLLLPAGVPFRTLGLVLLAP
LLFPPVNKPTAGQAEVWVLDVGQGLAVLVRTHEHALLYDAGPRYGDFDIGERVVFPSMKTLGLADLDLMILSHADSDHAG
GALAIQRLMPVARVLSGEPESLPASLEAEGCRSGEHWEWEQVSFTLWRWSQAGDGNQSSCVLLVEAGGERLLLTGDIDVP
AEQALLASDIPLGVRWLLVPHHGSRSSSSTAFIEAAGAEGALVSRSLHNAFGHPHPDVVQRLQASGTPIFDTAELGALQI
RLGRFEPIRGLRAERRFWREK

Nucleotide

• Length: 2226 bp

>NTDB_id=119350 CH92_RS06655 WP_025241001.1 1439639..1441864(+) (comA) [Stutzerimonas stutzeri strain 28a24]
ATGCGTACGGCAATGCTGGCGCTGGCAGCAGGGCTTTTACTGCTGCGCTTTCTACCGCAACTGCCACCGTTGTCGGCATT
GCCTTTTGTACTCGTGACGGGACTGGTCTTGTTGCCATTCCGCTGGCGAGCACTTGGATGCTTCCTGCTTGGGCTCGGAT
GGGCTTGCCTGAGTGCTCATTGGGTCTTAAGCGATCGCCTCCCGACCGAACTTGACGGCCGTACCTTCTGGCTTGAAGGG
CGGGTGGCGGGGCTACCGGATGTTCGTGGCGGTGTAGTGCGCTTCGAGCTGGTTGATGTCTCGTCCCGGCATTCCGGCTT
GCCTTCGCGGATGCGCCTGGCCTGGTACGGCGGGCCGATGATTCAGGCAGGAGAGCGATGGAGGCTCGCCGCCAAGCTCA
AAAGGCCACGTGGCCTGGTCAATCCTCATCCGTTCGATTACGAGGCCTGGCTTCTTGCGCGTCGGATCGGTGCCAGTGGC
ACGATTAAAGCAGGCGAGCGGGTGGCGTTTGCAGATGGGAACCTGGCGTGGCGCGACCGGTTGCGCCAACGCTTGATGGC
AGTTGACGCCCAGGGACGCTCGGGTGCAATTGCAGCGCTAGTGGTTGGCGATGACAGCGGTTTGTCCACGTCAGACTGGC
GCATCCTGCAGGACACCGGGACAGTGCACTTGATGGTGATTTCTGGACAGCATGTTGGGATGCTGGCCGGTTTACTCTAT
GGCCTGGTTGCACTAATGGCGCGTTGGGGAATCTGGCCGCGCCGAATCGCCTGGCTGCCCTGTGCCTGCGGTCTGGCGCT
GTTTGGTGCTCTCGCATACGGTTGGCTGGCGGGCTTCGAGGTCCCGGTTCAGCGAGCCTCGGTAATGGTCGCCCTGGTGC
TCTTGTGGCGCTTGCGGTTTCGCCATCTCGGTGTCTGGTTACCACTGCTAGTCGCGCTTGATGGCGTCCTGCTGATCGAT
CCTTTAGTCAGTTTGCAATCGGGGTTCTGGTTGTCCTTCTTAGCCGTGGCGCTGCTCGCCTTGGTCTTCCGTGGCCGATT
GGGCAGTTGGGGCTGGTGGCAAGCCCTGGGTCGCGCGCAGTGGAGCATGTCGCTCGGCCTGTTGCCGGTATTGCTTGCGC
TGGGCTTGCCGGTGAGCCTGAGCAGTCCAATCGCCAATCTTTTCGCGGTGCCGCTGGTCAGCATGCTGATCGTACCGCTG
TCCTTGTTGGGCACTTCGCTGCTCTGGTTGCCAGGCGTTGGTGAATGCTTGCTCTGGCTGGCGGGTGGCTTGTTGGCGTT
GCTCTTCGATACGCTGCGATGGCTTGCTGACTGGCAGTCCGCGTGGCTACCGGCCTCCTTGCCGATATGGGGCTGGGTGC
TGGTCGCGCTGGGAATGCTGCTGCTTTTGTTGCCGGCAGGGGTGCCATTTAGGACTTTAGGATTGGTGCTTCTCGCGCCG
TTGTTGTTTCCACCGGTAAATAAACCCACGGCGGGGCAGGCGGAGGTCTGGGTGCTTGACGTTGGCCAGGGGCTGGCCGT
GCTGGTGCGTACCCATGAGCATGCGCTGTTGTATGACGCGGGGCCGCGCTATGGCGACTTCGATATTGGCGAGCGGGTTG
TGTTTCCGTCGATGAAGACATTGGGATTGGCTGACCTCGATCTGATGATCCTCAGCCATGCCGACAGCGATCACGCTGGA
GGCGCTCTGGCGATTCAACGGCTGATGCCAGTGGCGCGGGTGCTCAGCGGTGAGCCGGAAAGCTTGCCTGCCTCGCTGGA
GGCTGAAGGGTGTCGCTCAGGAGAACACTGGGAGTGGGAGCAGGTCAGTTTTACGCTCTGGCGGTGGTCGCAAGCCGGGG
ATGGAAACCAATCCTCGTGTGTACTGTTGGTCGAAGCGGGCGGTGAGCGCCTGCTATTGACGGGGGATATCGATGTGCCG
GCCGAGCAGGCGCTGTTGGCGAGCGATATACCGCTGGGCGTGCGGTGGTTGCTGGTGCCGCATCATGGTAGTCGCAGTTC
ATCTTCAACCGCGTTTATCGAGGCAGCCGGCGCCGAAGGCGCGCTTGTCTCGCGCAGCCTGCACAACGCCTTCGGTCATC
CGCATCCAGATGTGGTGCAGCGTCTGCAGGCATCGGGCACCCCGATTTTCGATACGGCTGAACTAGGCGCTCTGCAGATC
CGTCTCGGTCGTTTCGAACCCATTCGAGGATTGCGCGCCGAACGGCGATTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Competence protein (Competence) (200-465)

• Metallo-beta-lactamase superfamily (Lactamase_B) (500-683)

• Domain of unknown function (DUF4131) (DUF4131) (6-167)

3D structure

• AlphaFold DB: W8RRZ7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	72.073	95.682	0.69
comA	Ralstonia pseudosolanacearum GMI1000	34.615	100	0.364