Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   Q433_RS12450 Genome accession   NZ_CP007409
Coordinates   2406529..2406864 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2401529..2411864
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  Q433_RS12430 (Q433_13440) gcvT 2402122..2403210 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  Q433_RS12435 (Q433_13445) hepAA 2403651..2405324 (+) 1674 WP_029726726.1 SNF2-related protein -
  Q433_RS12440 (Q433_13450) yqhG 2405345..2406139 (+) 795 WP_015714249.1 YqhG family protein -
  Q433_RS12445 (Q433_13455) sinI 2406322..2406495 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  Q433_RS12450 (Q433_13460) sinR 2406529..2406864 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  Q433_RS12455 (Q433_13465) tasA 2406957..2407742 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  Q433_RS12460 (Q433_13470) sipW 2407806..2408378 (-) 573 WP_072692741.1 signal peptidase I SipW -
  Q433_RS12465 (Q433_13475) tapA 2408362..2409123 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  Q433_RS12470 (Q433_13480) yqzG 2409394..2409720 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  Q433_RS12475 (Q433_13485) spoIITA 2409762..2409941 (-) 180 WP_029726723.1 YqzE family protein -
  Q433_RS12480 (Q433_13490) comGG 2410013..2410387 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  Q433_RS12485 (Q433_13495) comGF 2410388..2410771 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  Q433_RS12490 (Q433_13500) comGE 2410797..2411144 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  Q433_RS12495 (Q433_13505) comGD 2411128..2411559 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  Q433_RS12500 (Q433_13510) comGC 2411549..2411845 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=119218 Q433_RS12450 WP_003226345.1 2406529..2406864(+) (sinR) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=119218 Q433_RS12450 WP_003226345.1 2406529..2406864(+) (sinR) [Bacillus subtilis subsp. subtilis str. OH 131.1 strain OH131.1]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment