Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   KHU1_RS15435 Genome accession   NZ_CP007242
Coordinates   3234247..3235632 (-) Length   461 a.a.
NCBI ID   WP_042635531.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3229247..3240632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS15400 (KHU1_3006) flgL 3229422..3230339 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  KHU1_RS15405 (KHU1_3007) flgK 3230351..3231868 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  KHU1_RS15410 (KHU1_3008) - 3231884..3232366 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KHU1_RS15415 (KHU1_3009) flgM 3232381..3232647 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KHU1_RS15420 (KHU1_3010) - 3232717..3233136 (-) 420 WP_042635530.1 TIGR03826 family flagellar region protein -
  KHU1_RS15425 (KHU1_3011) comFC 3233210..3233899 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  KHU1_RS15430 (KHU1_3012) - 3233905..3234189 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  KHU1_RS15435 (KHU1_3013) comFA 3234247..3235632 (-) 1386 WP_042635531.1 DEAD/DEAH box helicase Machinery gene
  KHU1_RS15440 (KHU1_3014) - 3235741..3236589 (-) 849 WP_007407483.1 DegV family protein -
  KHU1_RS15445 (KHU1_3015) degU 3236687..3237376 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KHU1_RS15450 (KHU1_3016) degS 3237453..3238616 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator
  KHU1_RS15455 (KHU1_3017) - 3238839..3239486 (+) 648 WP_007614107.1 YigZ family protein -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 52634.00 Da        Isoelectric Point: 10.2284

>NTDB_id=118169 KHU1_RS15435 WP_042635531.1 3234247..3235632(-) (comFA) [Bacillus amyloliquefaciens KHG19]
MSEGASEFSEVRDFFYGRHLLRSEIPFSDQRIKRFTEKEYITAEPSIIRRKNRYVCQRCGQSDQACFAAFWAPSAKRQIT
YCRACVVMGRADELTSLYSWNQAHENSWENVKLSWEGTLTDGQKRAAAALTDAIKERQELLVWAVCGSGKTEMLFPGIEF
ALNHGLRVCVATPRTDVVLELLPRLKKAFEKVEVSALYGGSEDKGRLTPLMISTAHQLMRYRDIFDVMIIDEVDAFPFSA
DETLRFAVDKARKKNSALVYVTATPSDTLKKKAEAGLLKSVRIPARYHRKPLPEPRFLWCGNWKKKLQKGKLPRSVTDWV
RQKLQSQLPVFLFVPSVHVLKKTTDYFQKLNIRAEGVHAEDTFRKDKVKRFRDGRLDLLVTTTILERGVTVPKVQTCVLG
AEAPIFTESALVQIAGRTGRHYKHFSGDVVMFHFGITNGMKKAKKHIEHMNKLAQKSKLLD

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=118169 KHU1_RS15435 WP_042635531.1 3234247..3235632(-) (comFA) [Bacillus amyloliquefaciens KHG19]
ATGTCCGAAGGTGCTTCAGAATTTTCAGAGGTGCGGGATTTCTTTTACGGCCGGCATTTATTGAGATCTGAGATACCGTT
TTCAGACCAGCGTATTAAGCGTTTTACAGAAAAAGAATATATAACGGCCGAGCCGTCAATCATCCGCCGGAAAAATCGTT
ACGTCTGCCAACGATGCGGTCAGTCTGATCAAGCCTGCTTTGCGGCATTTTGGGCGCCCTCTGCCAAAAGGCAGATTACC
TATTGCCGTGCCTGTGTCGTGATGGGAAGGGCTGATGAACTGACATCATTATATTCTTGGAATCAAGCCCATGAAAACAG
CTGGGAGAATGTAAAGCTTTCTTGGGAAGGAACACTGACAGACGGACAGAAGCGGGCGGCCGCCGCGCTTACAGATGCGA
TAAAAGAGAGACAAGAGCTGTTAGTATGGGCGGTTTGCGGATCGGGGAAAACAGAGATGCTGTTTCCGGGTATCGAGTTT
GCGCTGAATCACGGTTTGCGCGTCTGTGTCGCGACTCCGCGTACAGATGTCGTACTTGAACTGCTGCCGAGACTGAAAAA
AGCATTTGAGAAAGTCGAAGTTTCTGCTTTGTACGGCGGCAGCGAGGACAAAGGCCGTCTGACCCCGTTAATGATTTCAA
CCGCTCACCAGCTGATGCGCTACCGAGACATTTTTGATGTCATGATAATAGATGAAGTAGATGCGTTTCCTTTTTCAGCC
GATGAGACATTAAGATTCGCTGTTGATAAAGCGAGGAAGAAAAACAGCGCCCTTGTTTATGTAACGGCAACTCCTTCAGA
CACATTAAAAAAGAAGGCTGAAGCCGGTTTGCTGAAAAGCGTCCGCATACCGGCCAGATATCATCGGAAACCCCTCCCGG
AGCCGCGTTTTTTGTGGTGCGGAAATTGGAAGAAGAAGCTTCAGAAAGGAAAACTGCCGCGCTCTGTAACCGATTGGGTC
CGCCAAAAACTTCAATCACAGCTGCCGGTTTTCTTATTCGTTCCGTCTGTACACGTATTGAAAAAGACAACGGATTATTT
TCAGAAATTAAACATACGGGCAGAAGGCGTTCATGCGGAAGACACATTCAGAAAGGATAAAGTGAAACGGTTCAGAGACG
GCCGGCTTGACCTGCTGGTAACGACTACGATTTTAGAAAGAGGGGTTACCGTGCCCAAAGTTCAGACATGTGTCCTCGGC
GCAGAAGCACCTATCTTTACTGAGAGCGCGCTCGTACAGATCGCGGGCAGAACGGGAAGGCATTATAAACATTTCAGCGG
TGATGTCGTCATGTTTCATTTCGGAATTACAAACGGAATGAAAAAAGCAAAAAAACATATAGAACATATGAACAAATTGG
CACAAAAAAGTAAATTGTTGGACTAG

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-266)

Helicase conserved C-terminal domain (Helicase_C)

(328-421)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

62.391

99.783

0.623

Multiple sequence alignment