Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   KHU1_RS15425 Genome accession   NZ_CP007242
Coordinates   3233210..3233899 (-) Length   229 a.a.
NCBI ID   WP_197061611.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens KHG19     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3228210..3238899
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KHU1_RS15390 (KHU1_3004) fliW 3228301..3228732 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  KHU1_RS15395 (KHU1_3005) - 3228762..3229331 (-) 570 WP_007407476.1 DUF6470 family protein -
  KHU1_RS15400 (KHU1_3006) flgL 3229422..3230339 (-) 918 WP_007407477.1 flagellar hook-associated protein FlgL -
  KHU1_RS15405 (KHU1_3007) flgK 3230351..3231868 (-) 1518 WP_007407478.1 flagellar hook-associated protein FlgK -
  KHU1_RS15410 (KHU1_3008) - 3231884..3232366 (-) 483 WP_003151394.1 flagellar protein FlgN -
  KHU1_RS15415 (KHU1_3009) flgM 3232381..3232647 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  KHU1_RS15420 (KHU1_3010) - 3232717..3233136 (-) 420 WP_042635530.1 TIGR03826 family flagellar region protein -
  KHU1_RS15425 (KHU1_3011) comFC 3233210..3233899 (-) 690 WP_197061611.1 phosphoribosyltransferase family protein Machinery gene
  KHU1_RS15430 (KHU1_3012) - 3233905..3234189 (-) 285 WP_007407481.1 late competence development ComFB family protein -
  KHU1_RS15435 (KHU1_3013) comFA 3234247..3235632 (-) 1386 WP_042635531.1 DEAD/DEAH box helicase Machinery gene
  KHU1_RS15440 (KHU1_3014) - 3235741..3236589 (-) 849 WP_007407483.1 DegV family protein -
  KHU1_RS15445 (KHU1_3015) degU 3236687..3237376 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  KHU1_RS15450 (KHU1_3016) degS 3237453..3238616 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25229.83 Da        Isoelectric Point: 8.0779

>NTDB_id=118168 KHU1_RS15425 WP_197061611.1 3233210..3233899(-) (comFC) [Bacillus amyloliquefaciens KHG19]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKRFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVISPLIRL
NNEKQSKKSKTDRLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=118168 KHU1_RS15425 WP_197061611.1 3233210..3233899(-) (comFC) [Bacillus amyloliquefaciens KHG19]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGCGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTATATAATGATGCGATGAAGGACTCATTGGCCCGTTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTG
AACAACGAAAAACAATCCAAAAAGAGCAAAACAGACAGGCTGTCTGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATTTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-61)

Phosphoribosyl transferase domain (Pribosyltran)

(167-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

59.912

99.127

0.594

Multiple sequence alignment