Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrB   Type   Machinery gene
Locus tag   BE24_RS11725 Genome accession   NZ_CP007208
Coordinates   2458421..2460049 (+) Length   542 a.a.
NCBI ID   WP_038679389.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain HKUOPL8     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2453421..2465049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE24_RS13965 - 2454574..2454723 (+) 150 WP_167330439.1 hypothetical protein -
  BE24_RS11710 (BE24_12100) cch1 2454723..2456513 (+) 1791 WP_038679383.1 cassette chromosome replicative helicase -
  BE24_RS11715 (BE24_12105) - 2456584..2456859 (+) 276 WP_038679385.1 hypothetical protein -
  BE24_RS11720 (BE24_12115) ccrA 2457051..2458400 (+) 1350 WP_038679387.1 cassette chromosome recombinase CcrA Machinery gene
  BE24_RS11725 (BE24_12120) ccrB 2458421..2460049 (+) 1629 WP_038679389.1 cassette chromosome recombinase CcrB Machinery gene
  BE24_RS11730 (BE24_12125) - 2460523..2460861 (+) 339 WP_038679391.1 SAUGI family uracil-DNA glycosylase inhibitor -
  BE24_RS11735 (BE24_12135) - 2460957..2461268 (+) 312 WP_038679393.1 DUF960 family protein -
  BE24_RS11740 (BE24_12140) - 2461284..2461790 (+) 507 WP_038679395.1 DUF1643 domain-containing protein -
  BE24_RS11745 (BE24_12145) - 2461811..2462227 (+) 417 WP_080704791.1 JAB domain-containing protein -
  BE24_RS11750 (BE24_12150) - 2462441..2463382 (-) 942 WP_038679397.1 LCP family protein -
  BE24_RS11755 (BE24_12155) - 2463396..2464502 (-) 1107 WP_051664374.1 DegT/DnrJ/EryC1/StrS family aminotransferase -
  BE24_RS11760 (BE24_12160) - 2464545..2465033 (-) 489 WP_327083169.1 acetyltransferase -

Sequence

Protein


Download         Length: 542 a.a.        Molecular weight: 62297.33 Da        Isoelectric Point: 9.7584

>NTDB_id=117774 BE24_RS11725 WP_038679389.1 2458421..2460049(+) (ccrB) [Staphylococcus xylosus strain HKUOPL8]
MKEMKRKSVGCYVRVSTISQDIDKFSINGQITQIKEYCQFHGYEVFDIYADRGVSGKTMNRPELQRMLKDAKEGKLDCVM
IYKTSRLARNTSDLLTIVEGLHKQNVEFFSLSENMKFDSNSGKLLLQILASFSEFERNNIAEGAFMGQLRRSQEGYYQGN
LPLAYDKIPDNKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSISAVSYILSNPFYIGKIQFAK
YKDWNDKRRKGLNDKPVIAEGKHTPIISQSLWDKVQARKKQVSEKPQVHGKGTNLLTGIIFCEKCGAAYAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQENHVDVAALNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQINQLKQQQNQEKPSYDTKQISIILRHIFQNIESMDKSQLK
ALYLTVIDHIDIRKDGNHKKQFYVTLKLNNEIIKQLFNNTPLDEVLLSTSSLFLPQTLFLKI

Nucleotide


Download         Length: 1629 bp        

>NTDB_id=117774 BE24_RS11725 WP_038679389.1 2458421..2460049(+) (ccrB) [Staphylococcus xylosus strain HKUOPL8]
ATGAAAGAAATGAAAAGAAAATCTGTAGGATGTTATGTTAGAGTTTCAACAATTTCTCAAGACATTGATAAATTTAGTAT
TAATGGGCAAATTACACAAATAAAGGAATATTGCCAATTTCACGGATATGAAGTTTTTGATATTTACGCTGACCGTGGTG
TTTCAGGAAAAACAATGAATCGCCCTGAGTTACAACGCATGTTAAAAGATGCTAAAGAAGGTAAATTGGATTGTGTTATG
ATTTATAAAACAAGTCGTTTAGCGCGTAACACATCTGACTTGTTAACAATTGTTGAAGGATTACACAAGCAAAATGTTGA
ATTCTTTAGCTTGTCCGAAAATATGAAATTTGACTCAAATAGCGGAAAATTACTCTTACAAATTTTAGCTTCCTTCTCTG
AATTTGAAAGGAATAACATCGCCGAAGGAGCATTTATGGGGCAGTTGAGAAGGTCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCGCTAGCTTACGATAAGATTCCTGATAATAAACATGAACTCATGATTAATCAACATGAAGCCAATATTGTGAAATA
TATTTTTGAATCTTATGCCAAAGGTCATGGTTATCGTAAAATTGCGAATGCACTCAATCACAAAGGCTATGTGACTAAAA
AAGGCAATCCCTTTAGTATTTCAGCCGTTTCTTATATTCTTTCAAATCCATTTTATATCGGCAAAATTCAATTCGCGAAA
TACAAGGATTGGAATGATAAACGCCGTAAAGGATTAAATGATAAGCCAGTAATCGCCGAAGGCAAACACACCCCTATCAT
TAGTCAATCATTATGGGATAAAGTACAAGCACGTAAAAAACAAGTAAGTGAAAAACCACAAGTCCATGGTAAAGGAACAA
ATCTGTTGACAGGAATAATTTTTTGCGAAAAATGTGGTGCAGCATATGCAGCTTCAAATACAACCAATACACTTAAAGAT
GGAACTAAAAAACGTATTCGTTACTATTCATGTAGTAATTTTCGAAACAAAGGTTCAAAAGTCTGTTCTGCGAATAGTGT
TAGAGCTGATGTCATAGAAAAATATGTTATGGACCAAATACTTGAAATTGTCAAAAGTGATAAAGTTCTCAAACAAGTTG
TCGAACGCGTCAATCAAGAGAATCATGTAGATGTAGCAGCACTCAACCATGATATTGCTTATAAACAACAACAATTTGAT
GAAATTAACACTAAACTTAAAAATCTAATTCAAACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGATATCACAAACCAAATTAATCAACTAAAACAGCAACAAAACCAAGAAAAACCAT
CTTACGATACGAAGCAAATATCCATTATCTTACGTCATATATTTCAAAACATAGAATCCATGGATAAATCACAACTCAAG
GCATTATACCTTACGGTCATTGATCATATCGATATTCGTAAAGACGGTAATCATAAAAAACAGTTCTACGTTACACTCAA
ACTCAATAATGAAATTATTAAACAACTTTTCAATAACACTCCACTCGACGAAGTGCTCCTCAGCACTTCGTCTTTATTTT
TGCCTCAAACACTCTTTCTTAAAATCTAA

Domains

Predicted by InterproScan.

Recombinase (Recombinase)

(180-280)

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(295-360)

Resolvase, N terminal domain (Resolvase)

(11-155)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrB Staphylococcus aureus N315

80.074

100

0.801

Multiple sequence alignment