Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccrA   Type   Machinery gene
Locus tag   BE24_RS11720 Genome accession   NZ_CP007208
Coordinates   2457051..2458400 (+) Length   449 a.a.
NCBI ID   WP_038679387.1    Uniprot ID   -
Organism   Staphylococcus xylosus strain HKUOPL8     
Function   promote SCCmec transfer (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2452051..2463400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BE24_RS11695 (BE24_12080) - 2452203..2452550 (+) 348 WP_038679378.1 MerR family transcriptional regulator -
  BE24_RS11700 (BE24_12085) - 2453046..2453288 (-) 243 WP_326011730.1 GNAT family N-acetyltransferase -
  BE24_RS11705 (BE24_12090) - 2453387..2454391 (+) 1005 WP_038679381.1 hypothetical protein -
  BE24_RS13965 - 2454574..2454723 (+) 150 WP_167330439.1 hypothetical protein -
  BE24_RS11710 (BE24_12100) cch1 2454723..2456513 (+) 1791 WP_038679383.1 cassette chromosome replicative helicase -
  BE24_RS11715 (BE24_12105) - 2456584..2456859 (+) 276 WP_038679385.1 hypothetical protein -
  BE24_RS11720 (BE24_12115) ccrA 2457051..2458400 (+) 1350 WP_038679387.1 cassette chromosome recombinase CcrA Machinery gene
  BE24_RS11725 (BE24_12120) ccrB 2458421..2460049 (+) 1629 WP_038679389.1 cassette chromosome recombinase CcrB Machinery gene
  BE24_RS11730 (BE24_12125) - 2460523..2460861 (+) 339 WP_038679391.1 SAUGI family uracil-DNA glycosylase inhibitor -
  BE24_RS11735 (BE24_12135) - 2460957..2461268 (+) 312 WP_038679393.1 DUF960 family protein -
  BE24_RS11740 (BE24_12140) - 2461284..2461790 (+) 507 WP_038679395.1 DUF1643 domain-containing protein -
  BE24_RS11745 (BE24_12145) - 2461811..2462227 (+) 417 WP_080704791.1 JAB domain-containing protein -
  BE24_RS11750 (BE24_12150) - 2462441..2463382 (-) 942 WP_038679397.1 LCP family protein -

Sequence

Protein


Download         Length: 449 a.a.        Molecular weight: 52361.00 Da        Isoelectric Point: 10.0332

>NTDB_id=117773 BE24_RS11720 WP_038679387.1 2457051..2458400(+) (ccrA) [Staphylococcus xylosus strain HKUOPL8]
MKQAMGYLRQSTTKQQSLPAQKQAIKTLAKKHNIQHITFYSDKQSGRTDKRNGYQQITQLIQQGQCDVLCCYRLNRLHRN
LKNALKLMKLCQKYHVHILSVHDGYFDMDKAFDRLKLNIFISLAELESDNIGEQVSNGIKEKARQGKLITTHAPFGYHYK
HGTFTINKNESPTVIAVFNYYIQGNGYKKITQFLEEDNKLIDRKPYQVRNIIMNPNYCGRVINQYGQYDNMFPAIVSTTI
YEEAQVTRTQKQVKRKPSENQLKQKIKCPYCDSTLTNMTIRKKNHTLRYYVCSQNMNASRFVCEFKGINAQALEASVLYT
CQDFFQNQQLYSKINNTIQQRIKGQRDIEVKNTLNHEQLIEKLARGKIDAETFRKQSQSLLQQSKPTLSINEQQIQRAFE
NVIQQRFTLNMLYPYIDEIHISKNKSLVGIYFKNEPLNIVNQATQSSIA

Nucleotide


Download         Length: 1350 bp        

>NTDB_id=117773 BE24_RS11720 WP_038679387.1 2457051..2458400(+) (ccrA) [Staphylococcus xylosus strain HKUOPL8]
ATGAAACAAGCAATGGGTTACTTACGTCAAAGTACAACAAAACAACAATCACTTCCGGCACAGAAACAAGCCATCAAGAC
ATTAGCTAAAAAACACAATATTCAACACATCACATTTTATAGTGATAAGCAATCAGGACGCACTGATAAGCGAAACGGTT
ACCAGCAAATTACTCAACTGATTCAACAAGGACAATGTGACGTACTATGTTGCTATCGTCTGAATCGACTTCATCGTAAT
CTAAAAAATGCATTAAAACTCATGAAATTGTGCCAAAAATATCATGTTCATATCTTAAGTGTTCATGATGGCTATTTTGA
TATGGATAAAGCATTCGATCGGCTTAAACTCAATATTTTCATCAGCTTGGCCGAATTAGAATCTGATAATATTGGCGAAC
AAGTAAGCAACGGGATAAAAGAAAAAGCGCGTCAGGGTAAATTGATAACTACACACGCCCCCTTTGGTTACCACTACAAA
CATGGTACATTCACGATAAATAAAAATGAATCACCAACGGTAATTGCCGTATTCAATTACTACATTCAAGGTAATGGCTA
TAAAAAAATTACACAGTTCTTAGAAGAAGATAACAAACTAATAGACCGTAAACCTTATCAAGTACGTAATATTATTATGA
ATCCCAATTACTGTGGTCGTGTTATCAATCAATACGGACAATATGACAACATGTTCCCAGCTATTGTTAGTACAACAATA
TACGAAGAAGCTCAAGTTACCCGAACTCAGAAACAAGTCAAACGTAAGCCGTCAGAAAACCAACTCAAACAAAAAATCAA
ATGTCCTTATTGTGATTCAACACTAACTAATATGACCATTAGAAAAAAGAACCATACATTACGTTATTACGTCTGTTCTC
AAAATATGAATGCATCCCGTTTTGTCTGTGAATTCAAAGGAATCAACGCACAAGCATTAGAAGCTAGTGTCTTATATACA
TGCCAGGATTTCTTTCAAAATCAACAGCTCTATTCAAAAATCAATAATACAATTCAACAACGCATCAAAGGACAAAGAGA
CATAGAAGTTAAAAATACACTTAATCACGAACAGCTGATAGAAAAATTAGCCCGAGGCAAAATCGATGCAGAAACGTTCA
GAAAACAATCTCAATCGTTACTTCAACAATCAAAACCAACACTATCAATAAATGAGCAACAAATTCAAAGAGCATTTGAA
AATGTAATTCAACAACGCTTCACGTTAAACATGTTATACCCATATATTGATGAAATTCATATTTCTAAAAACAAAAGCCT
TGTGGGAATCTATTTCAAAAATGAACCGCTAAACATTGTAAACCAAGCTACGCAATCATCGATTGCTTAA

Domains

Predicted by InterproScan.

Recombinase zinc beta ribbon domain (Zn_ribbon_recom)

(262-321)

Recombinase (Recombinase)

(169-249)

Resolvase, N terminal domain (Resolvase)

(4-147)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccrA Staphylococcus aureus COL

86.414

100

0.864
  ccrA Staphylococcus aureus N315

75.724

100

0.757

Multiple sequence alignment