Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   A440_RS12125 Genome accession   NZ_CP007194
Coordinates   2397493..2397975 (-) Length   160 a.a.
NCBI ID   WP_025370642.1    Uniprot ID   A0A5L2LNB1
Organism   Listeria monocytogenes serotype 1/2c str. 10-5025     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2392493..2402975
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A440_RS12095 (A440_2386) - 2393719..2395038 (-) 1320 WP_025370639.1 PBSX family phage terminase large subunit -
  A440_RS12100 (A440_2387) terS 2395031..2395756 (-) 726 WP_003733717.1 phage terminase small subunit -
  A440_RS12105 (A440_2388) - 2395800..2396027 (-) 228 WP_003733718.1 hypothetical protein -
  A440_RS12110 (A440_2389) - 2396303..2396737 (-) 435 WP_025370640.1 ArpU family phage packaging/lysis transcriptional regulator -
  A440_RS12115 (A440_2390) - 2396802..2397299 (-) 498 WP_003733720.1 Holliday junction resolvase RecU -
  A440_RS12120 (A440_2391) - 2397289..2397471 (-) 183 WP_025370641.1 hypothetical protein -
  A440_RS12125 (A440_2392) ssbA 2397493..2397975 (-) 483 WP_025370642.1 single-stranded DNA-binding protein Machinery gene
  A440_RS12130 (A440_2393) - 2397976..2398230 (-) 255 WP_003733723.1 hypothetical protein -
  A440_RS12140 (A440_2394) - 2398409..2398945 (-) 537 WP_009930870.1 hypothetical protein -
  A440_RS15270 - 2398942..2399109 (-) 168 WP_009930868.1 hypothetical protein -
  A440_RS12145 (A440_2395) - 2399110..2399319 (-) 210 WP_014601509.1 hypothetical protein -
  A440_RS12150 (A440_2396) - 2399316..2399717 (-) 402 WP_014601510.1 hypothetical protein -
  A440_RS15275 - 2399795..2399941 (-) 147 WP_014929526.1 hypothetical protein -
  A440_RS12155 (A440_2397) - 2399938..2400498 (-) 561 WP_014601511.1 DUF1642 domain-containing protein -
  A440_RS12160 (A440_2398) - 2400495..2400959 (-) 465 WP_014601512.1 class I SAM-dependent methyltransferase -
  A440_RS12165 (A440_2399) - 2401024..2401632 (-) 609 WP_003731837.1 hypothetical protein -
  A440_RS15350 (A440_2400) - 2401760..2402248 (-) 489 WP_014601513.1 pentapeptide repeat-containing protein -
  A440_RS12175 - 2402327..2402542 (-) 216 WP_003731843.1 hypothetical protein -
  A440_RS15280 - 2402554..2402721 (-) 168 WP_014601514.1 hypothetical protein -

Sequence

Protein


Download         Length: 160 a.a.        Molecular weight: 17654.55 Da        Isoelectric Point: 6.9828

>NTDB_id=117417 A440_RS12125 WP_025370642.1 2397493..2397975(-) (ssbA) [Listeria monocytogenes serotype 1/2c str. 10-5025]
MMNRVILVGRLTKDPDLRYTPAGAAVATFTLAVNRPFKNGQGEQEADFIQCVVWRKPAENVANFLKKGSLTGVDGRVQTR
NYEGNDGKRVYVTEIVAESVQFLEPKHNLAEGSTSNNNQNGANYSNNSKTTPYRADSSQNKDSFANEGKPIDINPDDLPF

Nucleotide


Download         Length: 483 bp        

>NTDB_id=117417 A440_RS12125 WP_025370642.1 2397493..2397975(-) (ssbA) [Listeria monocytogenes serotype 1/2c str. 10-5025]
ATGATGAATCGTGTCATACTAGTAGGACGCTTAACTAAAGACCCTGATTTACGTTATACCCCAGCTGGTGCAGCAGTTGC
GACTTTTACATTAGCTGTCAATCGCCCTTTCAAAAACGGGCAAGGAGAGCAAGAAGCTGACTTTATTCAATGTGTAGTTT
GGCGTAAACCAGCAGAAAACGTTGCTAATTTCTTGAAAAAAGGAAGTTTAACAGGCGTTGATGGTCGAGTTCAAACTCGT
AATTACGAGGGAAACGACGGTAAGCGCGTTTATGTGACGGAAATCGTAGCTGAATCAGTTCAATTTTTAGAGCCTAAGCA
CAACCTCGCAGAAGGCTCTACATCGAATAATAATCAGAACGGGGCTAATTATTCAAATAATAGTAAAACAACTCCATATC
GAGCTGATTCGAGTCAGAATAAGGATTCATTTGCAAATGAGGGTAAGCCGATAGACATTAACCCGGATGACTTGCCATTT
TAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5L2LNB1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

61.364

100

0.675
  ssb Latilactobacillus sakei subsp. sakei 23K

55.294

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

65.094

66.25

0.431

Multiple sequence alignment