Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   DYB47_RS06450 Genome accession   NZ_UHFV01000002
Coordinates   1284863..1285666 (-) Length   267 a.a.
NCBI ID   WP_003080272.1    Uniprot ID   G5JWH6
Organism   Streptococcus macacae NCTC 11558     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1279863..1290666
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS06435 (NCTC11558_01312) - 1280080..1280370 (-) 291 WP_003078814.1 rhodanese-like domain-containing protein -
  DYB47_RS06440 (NCTC11558_01313) smc 1280401..1283937 (-) 3537 WP_003082193.1 chromosome segregation protein SMC -
  DYB47_RS06445 (NCTC11558_01314) rnc 1283937..1284632 (-) 696 WP_003080395.1 ribonuclease III -
  DYB47_RS06450 (NCTC11558_01315) vicX 1284863..1285666 (-) 804 WP_003080272.1 MBL fold metallo-hydrolase Regulator
  DYB47_RS06455 (NCTC11558_01316) vicK 1285666..1287012 (-) 1347 WP_003081620.1 cell wall metabolism sensor histidine kinase VicK Regulator
  DYB47_RS06460 (NCTC11558_01317) vicR 1287005..1287712 (-) 708 WP_003079776.1 response regulator YycF Regulator
  DYB47_RS06465 (NCTC11558_01318) - 1288058..1288840 (+) 783 WP_003078979.1 amino acid ABC transporter ATP-binding protein -
  DYB47_RS06470 (NCTC11558_01319) - 1288837..1289655 (+) 819 WP_003079127.1 transporter substrate-binding domain-containing protein -
  DYB47_RS06475 (NCTC11558_01320) - 1289672..1290370 (+) 699 WP_003081514.1 amino acid ABC transporter permease -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29695.63 Da        Isoelectric Point: 5.9442

>NTDB_id=1171322 DYB47_RS06450 WP_003080272.1 1284863..1285666(-) (vicX) [Streptococcus macacae NCTC 11558]
MTESGFKFSILASGSSGNSFYLETSKKKILVDAGLSGKKLAQLMSEIDRSLADVDALLVTHEHKDHIHGVGVLARKYGLD
IYANEETWQAMDGMIGQIDSSQRHLFEMGKVKTFGDIDIESFGVSHDAAAPQFYRFMKDGKSFVMLTDTGYVSDRMAGII
ENADGYLIEANHDIEILRSGIYPWRLKQRILSDKGHLSNDDGAETMIRTLGNKTKKIYLGHLSKENNVKELAHMTMENSL
LQADLGVNHDFKIYDTSPDQASPLTTI

Nucleotide


Download         Length: 804 bp        

>NTDB_id=1171322 DYB47_RS06450 WP_003080272.1 1284863..1285666(-) (vicX) [Streptococcus macacae NCTC 11558]
ATGACAGAATCAGGTTTTAAATTTAGTATTCTGGCTTCTGGATCTAGCGGAAATAGTTTTTATCTTGAAACCTCTAAAAA
GAAGATTTTAGTAGATGCCGGTCTTTCTGGTAAAAAACTTGCTCAGCTAATGAGCGAAATTGACCGCAGCCTAGCAGATG
TGGATGCCCTTTTGGTAACACATGAGCATAAAGATCATATTCATGGAGTCGGAGTTTTGGCACGCAAATATGGTCTGGAT
ATTTATGCCAATGAAGAAACATGGCAGGCTATGGATGGTATGATCGGTCAAATTGACAGCAGTCAAAGACATCTTTTTGA
AATGGGGAAGGTCAAAACTTTTGGTGATATTGATATCGAAAGTTTTGGAGTTAGCCATGATGCGGCAGCCCCTCAGTTTT
ATCGCTTTATGAAAGATGGAAAGAGTTTTGTTATGCTCACTGATACAGGCTATGTGAGTGATCGTATGGCAGGAATTATT
GAAAACGCAGATGGCTATTTGATTGAGGCTAATCATGATATCGAAATCTTACGTTCAGGCATTTATCCTTGGCGCCTAAA
ACAGCGGATCTTGTCGGATAAAGGACATTTATCTAATGATGATGGTGCTGAAACCATGATACGAACTTTGGGTAATAAAA
CAAAGAAGATTTACTTAGGTCATCTTAGTAAGGAAAATAATGTTAAAGAATTAGCTCACATGACGATGGAAAATAGTTTG
CTGCAGGCTGATTTGGGAGTTAATCATGATTTTAAGATTTATGATACCTCACCTGATCAAGCATCGCCTCTGACGACTAT
TTAA

Domains

Predicted by InterproScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-214)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JWH6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

84.27

100

0.843

Multiple sequence alignment