Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   DYB47_RS02055 Genome accession   NZ_UHFV01000002
Coordinates   365524..366567 (+) Length   347 a.a.
NCBI ID   WP_003081862.1    Uniprot ID   G5JXY8
Organism   Streptococcus macacae NCTC 11558     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 360524..371567
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DYB47_RS02025 (NCTC11558_00412) tsaE 361575..362018 (+) 444 WP_040841683.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  DYB47_RS02030 (NCTC11558_00413) - 362011..362535 (+) 525 WP_003080287.1 GNAT family N-acetyltransferase -
  DYB47_RS02035 (NCTC11558_00414) brpA 362547..363764 (+) 1218 WP_003082433.1 biofilm formation/cell division transcriptional regulator BrpA -
  DYB47_RS02040 (NCTC11558_00415) - 364019..364309 (-) 291 WP_003080825.1 hypothetical protein -
  DYB47_RS02045 (NCTC11558_00416) - 364306..364725 (-) 420 WP_003079344.1 HIT family protein -
  DYB47_RS02050 (NCTC11558_00417) pptA 364796..365524 (+) 729 WP_003081097.1 ABC transporter ATP-binding protein Regulator
  DYB47_RS02055 (NCTC11558_00418) pptB 365524..366567 (+) 1044 WP_003081862.1 ABC transporter permease Regulator
  DYB47_RS02060 (NCTC11558_00419) ccrZ 366615..367397 (+) 783 WP_003079525.1 cell cycle regulator CcrZ -
  DYB47_RS02065 (NCTC11558_00420) trmB 367407..368042 (+) 636 WP_003081415.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  DYB47_RS02075 (NCTC11558_00422) rimP 368513..369004 (+) 492 WP_003078952.1 ribosome maturation factor RimP -
  DYB47_RS02080 (NCTC11558_00423) nusA 369040..370248 (+) 1209 WP_003080887.1 transcription termination factor NusA -
  DYB47_RS02085 (NCTC11558_00424) rnpM 370266..370562 (+) 297 WP_003078909.1 RNase P modulator RnpM -
  DYB47_RS02090 (NCTC11558_00425) - 370555..370857 (+) 303 WP_003082463.1 YlxQ-related RNA-binding protein -
  DYB47_RS09925 - 370878..371517 (+) 640 Protein_359 translation initiation factor IF-2 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 347 a.a.        Molecular weight: 40878.41 Da        Isoelectric Point: 10.4820

>NTDB_id=1171302 DYB47_RS02055 WP_003081862.1 365524..366567(+) (pptB) [Streptococcus macacae NCTC 11558]
MEHIFKKRRLNFLYQSLKYMRYVFNDHFVLVLIFLLGFLMVQYSRFLKAFPANHVPIILVLLVLLLFLLFWGNIATYLEE
ADSQFLLVQEAKLIEIIRKAKRRAYIFWTGIQTFCLLLLAPLFLRLGLSFPYFLLLLLFLGAVKGLIMERKSRQLISSKK
VFWDKAIHYEQKRQQRILKFFSLFTNVKGISASVKRRSYLDFLTNLLQKSHQKTWSNLYLRAFLRSGDYLGLTLRLLILS
LLSLIFIKSPLISAGLAILFNYLLLFQLLALYKHYDYQYLTVLFPVAGQSKKSNLFQLLRCILYLLTIFEVCLSFSWFKC
ALLVGAMLLLNEVYLSYKIKKIIDEGT

Nucleotide


Download         Length: 1044 bp        

>NTDB_id=1171302 DYB47_RS02055 WP_003081862.1 365524..366567(+) (pptB) [Streptococcus macacae NCTC 11558]
ATGGAACATATTTTCAAAAAAAGGCGTTTGAATTTTCTCTATCAATCATTGAAATACATGCGCTATGTCTTTAATGACCA
CTTTGTTTTGGTGCTGATTTTTCTGCTTGGTTTTTTGATGGTTCAATACAGCCGCTTTCTAAAAGCTTTTCCGGCTAACC
ATGTCCCTATCATTTTAGTTTTGCTGGTTTTGCTGCTTTTTTTGCTTTTTTGGGGCAATATTGCCACCTATTTGGAAGAA
GCAGACAGTCAGTTTCTCTTGGTTCAAGAAGCAAAACTGATTGAGATAATCAGAAAAGCTAAAAGACGTGCTTATATTTT
TTGGACTGGTATTCAGACTTTTTGCCTTTTGTTGCTGGCTCCTTTATTTCTCCGTTTAGGACTTTCATTCCCTTATTTTT
TGCTTCTTTTGCTCTTTTTAGGAGCTGTTAAGGGACTGATAATGGAAAGAAAAAGCAGACAGCTCATTTCTTCTAAAAAA
GTATTCTGGGATAAAGCCATTCATTATGAGCAGAAACGGCAGCAAAGGATTCTAAAATTCTTTTCTCTCTTTACGAATGT
GAAGGGAATTTCAGCTAGTGTTAAGCGGCGTTCTTATTTAGATTTTCTGACTAACCTTCTGCAGAAAAGTCACCAAAAAA
CATGGTCGAACCTGTATTTGCGTGCTTTTTTGCGCAGCGGAGATTATTTAGGCTTAACTTTACGTTTGCTCATTTTGAGT
CTTCTTAGCTTAATTTTTATTAAGAGTCCCTTGATTTCGGCTGGATTGGCTATTCTTTTTAACTATCTTTTGCTTTTTCA
GCTGCTGGCTCTCTACAAACATTATGATTATCAGTATCTGACAGTTTTATTTCCAGTAGCCGGTCAGTCAAAAAAGAGCA
ATTTATTTCAACTATTACGTTGTATTTTATATCTTTTGACAATTTTTGAAGTCTGTCTTAGTTTTTCTTGGTTTAAGTGC
GCTCTTTTAGTAGGAGCTATGCTTCTTTTAAACGAAGTCTACTTATCTTATAAAATAAAGAAGATAATTGACGAAGGCAC
TTAA

Domains

Predicted by InterproScan.

Bacterial ABC transporter protein EcsB (EcsB)

(3-155)

Bacterial ABC transporter protein EcsB (EcsB)

(157-328)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G5JXY8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

49.419

99.135

0.49
  pptB Streptococcus thermophilus LMD-9

48.547

99.135

0.481

Multiple sequence alignment