Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ACOOFN_RS11960 Genome accession   NZ_OZ244227
Coordinates   2402990..2403463 (+) Length   157 a.a.
NCBI ID   WP_420431775.1    Uniprot ID   -
Organism   MAG: Hyphobacterium sp. isolate 95e7138b-30c0-4f18-ad8a-671e508b9811     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2397990..2408463
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOOFN_RS11950 - 2398907..2399794 (+) 888 WP_420431771.1 hypothetical protein -
  ACOOFN_RS11955 uvrA 2399796..2402681 (-) 2886 WP_420431773.1 excinuclease ABC subunit UvrA -
  ACOOFN_RS11960 ssb 2402990..2403463 (+) 474 WP_420431775.1 single-stranded DNA-binding protein Machinery gene
  ACOOFN_RS11965 - 2403460..2404203 (+) 744 WP_420431777.1 hypothetical protein -
  ACOOFN_RS11970 - 2404322..2405062 (+) 741 WP_420431779.1 EF-hand domain-containing protein -
  ACOOFN_RS11975 - 2405157..2405951 (+) 795 WP_420431781.1 penicillin-binding transpeptidase domain-containing protein -

Sequence

Protein


Download         Length: 157 a.a.        Molecular weight: 17764.51 Da        Isoelectric Point: 5.0856

>NTDB_id=1171078 ACOOFN_RS11960 WP_420431775.1 2402990..2403463(+) (ssb) [MAG: Hyphobacterium sp. isolate 95e7138b-30c0-4f18-ad8a-671e508b9811]
MAGSVNKVILVGNLGADPEMRRLNSGDPVCNLRIATSESWRDKSSGERKEKTEWHNVVIFNENLCKVAENYLRKGSKIYI
EGQLQTRKWQDRDGNDRYTTEVVLQRFRGELQMLDSRGDNAGGGSYDRASDRSGGGGQVSDNRDNFRNDDMDDEIPF

Nucleotide


Download         Length: 474 bp        

>NTDB_id=1171078 ACOOFN_RS11960 WP_420431775.1 2402990..2403463(+) (ssb) [MAG: Hyphobacterium sp. isolate 95e7138b-30c0-4f18-ad8a-671e508b9811]
ATGGCCGGTAGTGTGAACAAAGTCATCCTCGTCGGAAATCTCGGCGCAGATCCCGAAATGCGCCGGCTCAATTCCGGCGA
CCCGGTTTGCAATCTGCGGATCGCGACGTCGGAAAGCTGGCGCGACAAGTCGTCCGGCGAGCGCAAGGAAAAGACCGAAT
GGCACAATGTCGTGATCTTCAACGAGAACCTCTGCAAGGTAGCCGAGAACTATCTGCGCAAGGGCTCCAAGATCTACATT
GAGGGCCAGTTGCAGACGCGCAAATGGCAAGACCGCGACGGGAATGACCGCTACACGACGGAAGTCGTGCTGCAACGCTT
CCGCGGCGAATTGCAGATGCTGGACAGCCGGGGCGACAATGCCGGTGGCGGCAGCTATGATCGGGCCAGTGATCGTTCCG
GTGGCGGCGGACAGGTGTCCGACAACCGCGACAATTTCCGGAATGACGATATGGACGACGAGATACCATTTTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-107)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

47.594

100

0.567
  ssb Vibrio cholerae strain A1552

50.867

100

0.561
  ssb Neisseria gonorrhoeae MS11

44.615

82.803

0.369

Multiple sequence alignment