Detailed information    

insolico Bioinformatically predicted

Overview

Name   chpA   Type   Regulator
Locus tag   ACOFKY_RS20415 Genome accession   NZ_OZ241355
Coordinates   4371906..4376429 (+) Length   1507 a.a.
NCBI ID   WP_419820021.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 4366906..4381429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS20390 - 4367411..4368052 (-) 642 WP_336954658.1 hypothetical protein -
  ACOFKY_RS20395 pilG 4368337..4368720 (+) 384 WP_004723803.1 twitching motility response regulator PilG Regulator
  ACOFKY_RS20400 - 4368741..4369109 (+) 369 WP_336954657.1 response regulator -
  ACOFKY_RS20405 - 4369113..4369649 (+) 537 WP_336954656.1 chemotaxis protein CheW -
  ACOFKY_RS20410 - 4369693..4371762 (+) 2070 WP_336954655.1 methyl-accepting chemotaxis protein -
  ACOFKY_RS20415 chpA 4371906..4376429 (+) 4524 WP_419820021.1 Hpt domain-containing protein Regulator
  ACOFKY_RS20420 - 4376438..4376902 (+) 465 WP_419329189.1 hypothetical protein -
  ACOFKY_RS20425 dapE 4376977..4378110 (-) 1134 WP_336954650.1 succinyl-diaminopimelate desuccinylase -
  ACOFKY_RS20430 - 4378266..4378406 (-) 141 WP_336954649.1 entericidin A/B family lipoprotein -
  ACOFKY_RS20435 - 4378535..4379368 (-) 834 WP_419820022.1 DUF1853 family protein -
  ACOFKY_RS20440 - 4379595..4379993 (+) 399 WP_419820023.1 YbaN family protein -

Sequence

Protein


Download         Length: 1507 a.a.        Molecular weight: 171228.71 Da        Isoelectric Point: 4.4225

>NTDB_id=1170806 ACOFKY_RS20415 WP_419820021.1 4371906..4376429(+) (chpA) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MKEILKHLVEHVTLPEDEYLGQDDEILEIFVEELEEIFELLQTSLDRWQLEEFKDTELVNIRRYFHTLKGSGRMVGAKRS
GELAWTVEDTLNRTITKNLELTAEIQQYVRAVFNIYKFKLYSEFLNRKPHHLALAPLVYLGQQLQQKQSLEPALGELLAL
SNTLDNENVITGLEIGEDTVIADLISMTTPHVIDPVVSGSLNTIEDVVLESTILDDSLTSETLEIFVEESEEHLAAIKDF
LHLEEHTPDQYNRLIRALHTLRGSSSMAHVNEVFEASGKVEHLFKVLVQEDTESSKNENALLTYYAEFVSDYLYVLKLKG
NQAIELKTIYQKFNDAWERYDFQHQYQHSQTGLVTQLVDLEIDLLLDAEFEFDKRAQVEYPAYFQQLTQQAQMLIDHTNN
RAAQGIHDFSLALKDGYEQVIRKPDLLNTDYAFEMFSKAHQEFIHLFDTLASGQRVSLNDSTQAILAELHDYLHQEIDTS
IDDQTIETSIEPEIEQQSSTVFIEVNPVESVGNYVLTQINLDKQNIDSEHSQREFDADVLDIFIEEADELLVGMDHDLNT
WSSHPDDTTALNNLMRYLHTLKGGANMVQATFIGLIAHELETIYERVIKGQLKAEPHLIQSIRLIQDDVADRIQLIREKA
IDYPATHILNVLQNIDQQRPIDTSQASTALESQFTHDLSDLHEVEYIEDEIVLTNDPISEQLEIEQSDKDHQSAINDHHL
FVDIDQDLNLDPVEMIAQETFIEEARELIDEGLSILTQWFDHRSNRSFLLQLQRIAHSLKGGAKMVKLEEVADIAYELEN
AFEQFGLHNFNSNVYDGLLEKTFHWLDTAIFKHDYDNFESLKSSLNSIEYVDVSAQLPEKLSRTNLIFEQSINEFVQGDG
TEPPSMLGEWDLSQKTESNNEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLTDMELAIQRLADQLRRMEGELE
SQIIAKHGDLSSRYADFDPLEMDQYSSLNQLSKSLAESASDLVDFKTTLAEKIRDTEGLLLQQSRIQAEIQESLMRTRLV
PFSRLLPRLQRLVRQTSSTVNKPTELLVNNTEGELDRNILEKLVSPLEHMLRNAIDHGIEDAEQRQKSGKALTGRIDLNI
SRQGTDVLVSFKDDGKGIDPKVIRDKAIEKGLIKTDQQLEPEEILQFIFHPGFSTAQQVTQISGRGVGLDVVQSEIKSLG
GQVSVSSELGYGSTFTITVPTTVAVSDALMVKVGDQQFAVPLSQIDRIVRISPAALEEYFETQNDYFDIDFQSYKLRYLG
EFTASQVTPRLHGLAHSLPVLLIKGSLGQSIAILVDQLIGSRSQIVVKPIGKQFATINAIAGATILGDGQVCLILDGQNI
ARQVQASTRSSAEHLQQDKQRHRDQRRLIMIVDDSVTVRKVTSRLLERQGFDVITAKDGVDAIEQLENVKPDLMLLDIEM
PRMDGFEVTNLVRHHEIHRDLPIIMITSRTGEKHRERAFSLGVTNYMGKPFQEADLLENIDALLTVK

Nucleotide


Download         Length: 4524 bp        

>NTDB_id=1170806 ACOFKY_RS20415 WP_419820021.1 4371906..4376429(+) (chpA) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGAAAGAAATATTAAAACATTTAGTGGAACATGTCACTTTACCTGAAGATGAGTATCTTGGTCAGGATGATGAAATTTT
AGAAATTTTTGTAGAAGAACTCGAAGAAATTTTTGAATTGTTACAAACGTCTCTTGATCGCTGGCAACTCGAAGAGTTTA
AAGATACAGAATTGGTCAATATTCGCCGTTATTTTCATACTCTTAAAGGGTCTGGACGCATGGTGGGGGCTAAACGTTCT
GGTGAGCTTGCTTGGACTGTTGAAGATACATTAAATCGTACTATTACGAAAAATCTGGAACTTACTGCTGAGATTCAACA
ATATGTACGCGCAGTATTTAATATTTATAAGTTTAAACTGTATTCAGAGTTTTTAAATAGAAAACCGCATCATTTAGCTT
TAGCACCTTTGGTGTATTTGGGGCAACAATTACAACAGAAACAAAGCTTAGAACCTGCTTTAGGCGAGTTACTGGCATTA
TCAAATACACTAGATAATGAAAATGTCATTACGGGGTTGGAGATTGGCGAAGATACGGTAATAGCAGACCTAATCTCTAT
GACAACTCCGCATGTGATTGATCCAGTTGTAAGTGGTTCCTTAAATACTATTGAAGATGTAGTGCTTGAATCGACGATTT
TAGATGATAGTTTAACATCTGAAACCTTGGAGATTTTTGTCGAAGAGTCAGAGGAACATCTGGCGGCAATTAAAGACTTT
TTGCACTTAGAAGAACATACGCCTGATCAATATAATCGCTTGATTCGTGCCTTACATACTTTGCGTGGTAGTTCTTCAAT
GGCGCATGTCAATGAGGTCTTTGAAGCAAGTGGTAAAGTAGAGCATTTATTTAAAGTATTGGTTCAAGAAGATACTGAAT
CTTCAAAAAATGAAAATGCTTTACTAACCTACTATGCTGAATTTGTCAGTGACTATCTCTATGTTTTAAAGCTGAAAGGT
AATCAAGCCATTGAGCTGAAAACTATATATCAAAAATTTAATGATGCTTGGGAGCGTTATGATTTCCAACACCAATACCA
GCATTCACAAACGGGGTTAGTCACACAATTAGTTGATCTGGAGATTGATCTACTGTTAGATGCCGAGTTTGAGTTTGATA
AGCGAGCCCAAGTTGAATATCCAGCATATTTCCAACAGCTAACACAACAAGCACAGATGCTGATTGATCATACTAATAAT
CGTGCTGCACAAGGCATCCATGATTTTAGTCTGGCTTTAAAAGATGGCTATGAGCAAGTTATTCGCAAGCCTGATTTATT
AAATACTGATTATGCTTTTGAAATGTTTTCTAAGGCGCATCAAGAATTTATTCATTTATTCGACACCTTGGCCTCAGGCC
AACGGGTCAGCTTAAATGATTCAACACAAGCGATTCTGGCTGAGTTACATGACTATTTACACCAAGAAATAGACACAAGT
ATTGATGATCAGACTATTGAAACAAGTATAGAGCCGGAAATTGAGCAACAGTCAAGTACAGTATTCATTGAAGTAAATCC
TGTTGAATCAGTGGGTAATTATGTACTGACACAAATTAATCTTGATAAACAGAATATTGACTCAGAGCATAGTCAGCGTG
AATTTGATGCAGATGTCTTAGACATTTTTATTGAAGAAGCGGATGAGTTGTTGGTTGGGATGGATCATGACTTAAATACT
TGGTCAAGCCATCCTGATGACACAACTGCATTAAATAATTTGATGCGTTATTTGCATACCTTAAAAGGTGGGGCAAATAT
GGTTCAAGCCACCTTTATTGGTTTGATTGCACATGAGTTAGAAACGATTTATGAACGAGTGATCAAAGGTCAGCTCAAAG
CTGAACCACATCTTATTCAATCTATTCGTTTAATTCAGGATGATGTGGCAGATCGTATTCAATTGATTCGTGAAAAAGCA
ATCGATTATCCTGCGACTCACATTCTCAATGTTTTACAAAATATTGATCAGCAACGTCCGATTGACACGAGCCAAGCTTC
AACAGCACTTGAATCGCAATTTACCCATGATTTATCAGATTTGCATGAAGTTGAATATATTGAAGATGAAATTGTTTTAA
CGAACGATCCAATATCGGAACAGCTTGAAATTGAACAATCTGATAAAGATCATCAATCAGCAATTAATGATCATCACTTG
TTTGTAGATATTGATCAAGATCTGAATTTGGATCCTGTTGAAATGATTGCTCAAGAAACTTTTATTGAAGAGGCTCGAGA
GCTGATTGATGAAGGTCTAAGCATTTTAACTCAATGGTTTGATCACCGAAGTAATCGTAGCTTCTTACTCCAATTACAAC
GTATTGCACACAGCTTAAAAGGTGGTGCGAAGATGGTGAAATTGGAAGAAGTCGCGGATATTGCTTATGAGTTGGAAAAT
GCATTTGAACAATTTGGTTTACATAATTTTAACTCAAATGTTTATGATGGCTTGCTGGAAAAAACCTTTCATTGGCTAGA
TACAGCTATTTTTAAACATGATTATGACAACTTTGAAAGCTTAAAATCGAGTTTAAATAGCATTGAATATGTTGATGTAT
CTGCACAGCTTCCAGAAAAATTATCCCGTACCAATTTAATTTTTGAGCAATCAATTAATGAGTTTGTTCAGGGGGATGGC
ACTGAGCCACCGTCAATGTTGGGTGAATGGGATCTTTCACAAAAAACTGAATCCAACAATGAGATGATCCGTATCTCTGC
GGATTTAGTCGAAAAAATGATTGATCTTTCTGGTGAGAATGCAATTAACCGTTCACGTATTGAGATGGATCTAGGGCAGT
TAGGTAATACCTTGACTGATATGGAGTTGGCAATCCAACGTTTGGCTGATCAGCTACGCCGAATGGAAGGCGAGTTGGAA
AGTCAAATCATTGCAAAACATGGTGATTTAAGCTCTCGTTATGCCGATTTTGACCCTTTAGAAATGGATCAATATTCATC
TCTAAATCAGTTATCAAAATCGCTGGCTGAATCTGCATCTGACTTGGTTGATTTTAAGACCACACTGGCTGAAAAGATTC
GTGATACTGAAGGCTTATTGCTGCAGCAATCTCGTATTCAAGCTGAAATTCAGGAAAGCTTGATGCGTACTCGTCTTGTA
CCATTCTCAAGATTGTTACCTCGATTACAGCGCTTGGTTCGCCAGACCTCTTCAACAGTTAATAAGCCCACTGAGCTTTT
AGTCAATAATACTGAAGGGGAATTGGACCGCAATATTCTGGAAAAGTTAGTTTCGCCGTTAGAACATATGCTACGTAATG
CGATTGACCACGGGATAGAAGATGCCGAACAGCGTCAGAAATCTGGCAAAGCGTTGACAGGTCGAATTGATTTGAATATT
AGTCGTCAAGGTACAGATGTGCTTGTATCGTTTAAAGATGATGGTAAAGGAATTGATCCAAAAGTTATTCGTGACAAAGC
GATCGAAAAAGGGTTGATCAAAACTGATCAACAGTTAGAGCCTGAGGAAATACTTCAGTTTATTTTCCATCCTGGTTTCA
GTACAGCACAGCAAGTAACACAAATCTCTGGTCGTGGTGTTGGCTTGGATGTCGTGCAAAGTGAAATTAAATCACTTGGT
GGACAAGTGAGTGTCAGTTCTGAATTAGGTTACGGCTCAACCTTTACAATTACTGTACCCACAACAGTTGCGGTTAGTGA
TGCCTTGATGGTGAAAGTGGGTGATCAGCAATTTGCAGTGCCATTATCGCAAATTGATCGTATTGTTCGAATTTCTCCAG
CTGCTTTGGAAGAGTATTTTGAAACTCAAAATGACTATTTTGACATCGATTTCCAGAGCTATAAACTACGTTATTTAGGT
GAGTTCACAGCGAGTCAAGTCACTCCACGTTTACACGGGCTTGCACATTCATTACCGGTATTGCTGATCAAGGGAAGCTT
AGGGCAATCCATTGCCATTCTTGTCGATCAATTAATTGGTTCACGCTCACAAATTGTGGTCAAACCAATTGGTAAGCAGT
TTGCAACAATCAATGCGATTGCAGGTGCAACCATTCTTGGTGATGGGCAGGTTTGTTTGATTCTTGATGGGCAAAATATT
GCACGACAGGTTCAGGCATCTACTCGTAGTAGTGCTGAACATCTTCAACAGGACAAACAACGTCATCGTGATCAACGCCG
TTTGATTATGATTGTGGATGACTCAGTTACAGTTCGTAAGGTCACTTCACGTTTGCTAGAGCGTCAAGGTTTCGATGTGA
TTACTGCCAAAGATGGCGTGGATGCGATTGAACAACTTGAAAATGTCAAACCAGACTTGATGTTGCTGGATATTGAAATG
CCTCGAATGGATGGCTTTGAAGTCACAAATTTGGTTCGCCACCATGAAATTCACCGCGATTTGCCTATTATTATGATTAC
GTCACGAACAGGGGAAAAACATCGTGAACGTGCATTTAGCTTAGGGGTGACAAATTATATGGGTAAACCATTCCAAGAAG
CTGATTTATTGGAAAATATTGATGCTTTGTTGACGGTTAAATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(1389-1500)

CheW-like domain (CheW)

(1228-1364)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(1086-1222)

Hpt domain (Hpt)

(539-627)

Hpt domain (Hpt)

(25-110)

Hpt domain (Hpt)

(739-803)

Hpt domain (Hpt)

(221-301)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

59.398

100

0.602

Multiple sequence alignment