Detailed information    

insolico Bioinformatically predicted

Overview


Name   dprA   Type   Machinery gene
Locus tag   ACOFKY_RS17400 Genome accession   NZ_OZ241355
Coordinates   3756036..3757163 (-) Length   375 a.a.
NCBI ID   WP_336953746.1    Uniprot ID   -
Organism   MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context


Location: 3751036..3762163
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACOFKY_RS17375 - 3751170..3751916 (-) 747 WP_336953749.1 AraC family transcriptional regulator -
  ACOFKY_RS17380 - 3751929..3753167 (-) 1239 WP_336953858.1 MFS transporter -
  ACOFKY_RS17385 - 3753317..3753961 (+) 645 WP_336953748.1 TetR/AcrR family transcriptional regulator -
  ACOFKY_RS17390 - 3754103..3754996 (+) 894 WP_336953857.1 DMT family transporter -
  ACOFKY_RS17395 - 3755420..3755989 (-) 570 WP_336953747.1 L-threonylcarbamoyladenylate synthase -
  ACOFKY_RS17400 dprA 3756036..3757163 (-) 1128 WP_336953746.1 DNA-processing protein DprA Machinery gene
  ACOFKY_RS17405 tsaP 3757187..3758338 (-) 1152 WP_419360044.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  ACOFKY_RS17410 def 3758462..3758992 (+) 531 WP_004723400.1 peptide deformylase -
  ACOFKY_RS17415 - 3759062..3759568 (+) 507 WP_419360042.1 DUF2946 family protein -
  ACOFKY_RS17420 - 3759639..3761711 (+) 2073 WP_419819853.1 TonB-dependent copper receptor -
  ACOFKY_RS17425 - 3761754..3761996 (+) 243 WP_056518382.1 hypothetical protein -

Sequence


Protein


Download         Length: 375 a.a.        Molecular weight: 42255.16 Da        Isoelectric Point: 6.6982

>NTDB_id=1170791 ACOFKY_RS17400 WP_336953746.1 3756036..3757163(-) (dprA) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MLKQISNDQYDAIRLWYLVQHSLSAFRKLETHFGSIVKALQPENLNRWSEAKIHKNHLERAKEFLTALGQSKFQVCFDKI
QQHTDFILLDTDPHYPQQLLPYHDHPPILFGKGSFQNLSQPQIAIVGSRKASPHGKQVAYDFAYYLSEKGFFITSGLALG
IDEAAHMGGLKHHRTIAVIGTGLDLVYPSQNRQLQEQILQHAGTILTEYLPETQPIQRNFPYRNRIVSGLSLGVVVAEAQ
LGSGSLITAQAAAEQGKVIFAIPGHIYGEHHQGCHQLIREGAILVDHPEQIVEDLALPTQWHCAQQPESQSPMPQIPEHL
FNLYQLLDWIGQDLDTLAQSSNLKIAQLTSDLMELELLGHCIQQSGLYLRCRVSY

Nucleotide


Download         Length: 1128 bp        

>NTDB_id=1170791 ACOFKY_RS17400 WP_336953746.1 3756036..3757163(-) (dprA) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGTTGAAGCAAATATCCAATGACCAATATGATGCCATCAGACTTTGGTATTTGGTTCAACATTCGCTCAGTGCTTTTCG
TAAATTAGAAACACATTTTGGTTCTATCGTAAAAGCACTGCAACCTGAAAATTTAAACCGCTGGTCTGAAGCTAAAATTC
ATAAAAACCATCTTGAAAGAGCCAAGGAATTTCTCACTGCGCTTGGGCAATCCAAATTTCAAGTTTGCTTCGATAAAATT
CAACAGCATACTGATTTTATTCTTTTAGATACTGATCCTCATTACCCTCAACAACTTTTGCCTTATCATGATCATCCCCC
TATTCTGTTTGGTAAAGGTTCATTCCAAAATCTAAGTCAACCACAAATCGCCATAGTAGGTAGTCGAAAGGCCAGTCCTC
ATGGAAAACAAGTGGCTTATGATTTTGCTTACTATCTGAGTGAAAAAGGCTTTTTTATTACCAGTGGTTTAGCGTTGGGA
ATAGATGAAGCTGCACACATGGGTGGACTAAAACATCATCGAACTATTGCTGTGATCGGTACAGGCTTAGATCTGGTTTA
TCCGAGCCAAAATAGACAGTTACAAGAGCAAATTTTGCAACATGCAGGAACAATCCTAACTGAATACTTACCAGAAACTC
AGCCTATTCAACGAAACTTTCCTTATCGTAATCGAATCGTGAGTGGTTTAAGCTTAGGTGTTGTTGTCGCAGAAGCCCAA
CTCGGCAGTGGTTCACTGATTACGGCGCAAGCCGCCGCCGAACAAGGCAAAGTGATTTTTGCAATTCCTGGGCATATTTA
TGGAGAACATCATCAAGGATGTCATCAACTCATTCGTGAAGGTGCTATTCTGGTCGACCATCCAGAACAGATTGTTGAAG
ATCTAGCACTTCCAACCCAATGGCACTGCGCACAACAACCTGAATCCCAATCCCCAATGCCACAAATTCCTGAGCATTTA
TTTAACCTATATCAGTTGCTGGATTGGATTGGACAAGATTTAGATACCCTCGCTCAAAGTTCAAATTTAAAAATAGCACA
ACTCACAAGCGATCTCATGGAATTAGAACTTCTGGGTCACTGTATTCAACAATCTGGGCTGTACTTACGTTGCCGAGTCA
GTTATTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Acinetobacter baumannii strain A118

64.533

100

0.645

  dprA Acinetobacter baumannii D1279779

64

100

0.64

  dprA Acinetobacter baylyi ADP1

61.358

100

0.627


Multiple sequence alignment