Detailed information NTG1170783

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: ACOFKY_RS14750
• Genome accession: NZ_OZ241355
• Coordinates: 3189836..3190717 (+)
• Length: 293 a.a.
• NCBI ID: WP_419819692.1
• Uniprot ID: -
• Organism: MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3184836..3195717

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ACOFKY_RS14730	secG	3185438..3185779 (-)	342	WP_419819689.1	preprotein translocase subunit SecG	-
ACOFKY_RS14735	tpiA	3185789..3186583 (-)	795	WP_419819690.1	triose-phosphate isomerase	-
ACOFKY_RS14740	pilB	3186860..3188569 (+)	1710	WP_419819691.1	type IV-A pilus assembly ATPase PilB	Machinery gene
ACOFKY_RS14745	-	3188601..3189833 (+)	1233	Protein_2897	type II secretion system F family protein	-
ACOFKY_RS14750	pilD	3189836..3190717 (+)	882	WP_419819692.1	prepilin peptidase	Machinery gene
ACOFKY_RS14755	coaE	3190744..3191343 (+)	600	WP_419819693.1	dephospho-CoA kinase	-
ACOFKY_RS14760	-	3191738..3192658 (-)	921	WP_336952313.1	DMT family transporter	-
ACOFKY_RS14765	rlmB	3192697..3193452 (-)	756	WP_336952314.1	23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB	-
ACOFKY_RS14770	-	3193612..3193935 (-)	324	WP_004718357.1	pyrimidine/purine nucleoside phosphorylase	-
ACOFKY_RS14775	-	3194339..3194551 (+)	213	WP_419327006.1	hypothetical protein	-

Sequence

Protein

• Length: 293 a.a.
• Molecular weight: 32732.17 Da
• Isoelectric Point: 8.0681

>NTDB_id=1170783 ACOFKY_RS14750 WP_419819692.1 3189836..3190717(+) (pilD) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
MNMFHDLLNFLIQSPTALYLTVGILGLCIGSFLNVVIYRTPKIMEKEWRQDWHAECQLLAGSQQIVIDEEKLSLSQPAST
CPKCKTSIRWYQNIPVISWLALRGKCASCQNPIGMRYPFVELLTAVCSLTVVAVYGPTLQMVFGVLLTWVLITLTFIDFD
TQLLPDRFTLTLAAIGLGINSFHLYTTASAAIWGYIIGFLCLWIVYYLFKIVTGKEGMGYGDFKLLAALGAWMGPLMLPL
IILLSSVVGAIIGIILLKIRKENIPFAFGPYIAIAGWIAFLWGEQIMKVYLGQ

Nucleotide

• Length: 882 bp

>NTDB_id=1170783 ACOFKY_RS14750 WP_419819692.1 3189836..3190717(+) (pilD) [MAG: Acinetobacter sp. isolate 91b77bb6-a760-4576-a270-dd86adb6cd71]
ATGAATATGTTCCATGATTTGTTAAATTTTCTGATTCAATCCCCAACAGCGCTCTATCTGACTGTTGGTATCTTAGGGCT
TTGTATTGGTAGTTTTTTAAATGTGGTGATTTACCGCACACCCAAGATAATGGAAAAAGAATGGCGACAGGATTGGCATG
CTGAGTGCCAATTACTGGCGGGTTCACAACAGATTGTGATTGATGAAGAAAAACTCAGTCTCAGCCAACCAGCCTCTACC
TGTCCCAAATGCAAAACCTCGATTCGCTGGTACCAAAATATACCCGTCATCAGTTGGTTAGCTTTAAGAGGGAAATGTGC
TTCATGCCAAAATCCAATTGGCATGCGTTATCCATTTGTTGAGCTTTTAACTGCGGTGTGTTCATTAACAGTCGTTGCTG
TTTACGGCCCAACACTACAAATGGTTTTTGGTGTACTGCTGACTTGGGTGCTAATCACACTGACATTTATTGATTTTGAC
ACTCAATTACTTCCAGACCGCTTTACTTTAACCTTGGCTGCCATAGGTTTAGGTATTAACTCATTTCATCTTTATACAAC
AGCAAGTGCTGCAATTTGGGGATATATTATTGGTTTCCTCTGTCTCTGGATTGTCTACTATCTATTTAAAATAGTTACAG
GTAAAGAAGGCATGGGTTATGGTGACTTTAAGCTACTTGCTGCACTTGGCGCTTGGATGGGACCCTTGATGTTACCGTTA
ATTATCCTACTTTCTTCTGTGGTAGGTGCGATCATTGGTATTATTTTACTTAAGATTCGTAAAGAAAATATCCCTTTTGC
TTTCGGTCCTTATATTGCCATCGCAGGATGGATTGCATTTCTATGGGGTGAGCAAATTATGAAAGTATATTTGGGTCAAT
AA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (146-254)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (24-133)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	72.917	98.294	0.717
pilD	Acinetobacter nosocomialis M2	72.917	98.294	0.717
pilD	Vibrio campbellii strain DS40M4	54.613	92.491	0.505
pilD	Vibrio cholerae strain A1552	53.676	92.833	0.498
pilD	Neisseria gonorrhoeae MS11	43.885	94.881	0.416