Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7W_RS07275 Genome accession   NZ_OZ217346
Coordinates   1504219..1506177 (-) Length   652 a.a.
NCBI ID   WP_411865703.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1499219..1511177
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS07260 (SMID22_15000) - 1500907..1502073 (-) 1167 WP_411865701.1 MalY/PatB family protein -
  ACLV7W_RS07265 (SMID22_15010) - 1502081..1503175 (-) 1095 WP_411865702.1 cystathionine gamma-synthase -
  ACLV7W_RS07270 (SMID22_15020) - 1503341..1503796 (-) 456 WP_125393633.1 hypothetical protein -
  ACLV7W_RS07275 (SMID22_15030) amiA 1504219..1506177 (-) 1959 WP_411865703.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7W_RS07280 (SMID22_15040) - 1506381..1508003 (-) 1623 WP_411865704.1 putative polysaccharide biosynthesis protein -
  ACLV7W_RS07285 (SMID22_15050) - 1508109..1509554 (+) 1446 WP_411865705.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  ACLV7W_RS07290 (SMID22_15060) - 1509601..1509792 (-) 192 WP_000051184.1 CsbD family protein -
  ACLV7W_RS07295 (SMID22_15070) - 1509893..1510543 (-) 651 WP_000614491.1 DUF1803 domain-containing protein -
  ACLV7W_RS07300 (SMID22_15080) - 1510527..1511039 (-) 513 WP_084953298.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72693.15 Da        Isoelectric Point: 4.8628

>NTDB_id=1170451 ACLV7W_RS07275 WP_411865703.1 1504219..1506177(-) (amiA) [Streptococcus mitis isolate S. mitis D22]
MKQSKAKYAALAGIVLSAGILLSACGSSSTASKTYNYVYVSDPSSLNYLAENRATTNDIVVNLVDGLMENDQYGNYIPSL
AEDWSVSKDGLTYTYKLRKDAKWYTADGEEYAPVTAQDFVTGLKYAADKKSEALYLVQESVAGLDDYITGKTTDFSTVGV
KALDEQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEFKKNPNYWDAK
NVFVDDVKLAYYDGSDQDALARNFVEGAYSYARLYPNSSSFEGIKEKNKDNIIYSLQDATSYFLNFNLDRKSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVSINGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNAEKAKAKFAEAKKELQAKGVQFPIHLDMTVDQAAKKGVQEANSMKQSIEAALGAENVVIDIQQLTTEDYDN
TSYLAQTAAQKDYDLYNGGWGPDYQDPSTYLDVFNVNSGGLMQNLGIEPGEANDKVKAVGLDVYTQMLEEANKEQDLAKR
YEKYAEIQAWLVDSALAIPNVSKGGTPVLRKTVPFSEPYSLAGNKGIESYKYLKVQDKTVTKDEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1170451 ACLV7W_RS07275 WP_411865703.1 1504219..1506177(-) (amiA) [Streptococcus mitis isolate S. mitis D22]
ATGAAACAGTCTAAGGCCAAGTATGCAGCACTTGCAGGTATCGTTTTAAGTGCAGGTATTTTATTAAGCGCGTGTGGAAG
TTCTAGCACAGCGTCAAAAACATATAACTATGTTTACGTAAGTGACCCATCAAGTTTGAACTATCTAGCGGAAAACCGTG
CAACGACCAATGATATCGTGGTTAATTTGGTAGATGGGCTCATGGAAAATGACCAGTATGGAAACTATATTCCATCTTTG
GCAGAGGATTGGAGTGTTTCTAAGGACGGTTTGACCTATACCTACAAACTGCGTAAAGATGCGAAATGGTATACTGCAGA
TGGGGAAGAATATGCTCCTGTAACTGCCCAAGATTTTGTGACAGGTTTGAAATATGCGGCTGATAAAAAATCAGAAGCCT
TGTACTTAGTGCAAGAATCCGTTGCTGGTTTAGATGACTATATCACTGGTAAAACAACAGACTTTTCAACTGTCGGAGTC
AAGGCTCTTGATGAGCAAACTGTTCAGTACACTTTGACACGACCAGAATCTTACTGGAACTCAAAAACAACTTCAACGAT
TCTCTTCCCTGTTAATGCGGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCATCTAGCATTTTGTACA
ATGGACCTTTCTTGATGAAATCCTTTGTTTCAAAATCTGTCATTGAATTCAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTAAAATTGGCCTATTATGATGGTAGTGACCAAGATGCACTGGCTCGTAACTTTGTCGAGGG
GGCTTATAGCTACGCTCGTCTTTATCCAAATAGTTCAAGCTTTGAAGGGATTAAAGAGAAGAATAAGGACAATATCATCT
ATAGCTTGCAAGATGCTACTTCTTACTTCTTAAACTTTAACCTAGACAGAAAATCTTATAAATTCACTTCCAAGACAAGT
GATGCTGAAAAGAAATCGACTCAAGAAGCCGTTCTTAATAAGAACTTCCGTCAAGCTATTAACTTTGCCTATGATCGTAC
AGCTTACGGGGCTCAATCTCAAGGAGAGGATGGTGCAACTAAGATTTTGCGTAATTTGGTTGTTCCACCAAACTTCGTAA
GTATCAACGGAAAAGACTTTGGTGAAGTAGTAGCCTCTAAGATGGTGAATTATGGTAAGGAATGGCAAGGAATCAACTTT
GCGGATGCCCAGGATCCATACTACAATGCTGAAAAAGCCAAAGCCAAATTTGCTGAAGCTAAGAAAGAACTCCAAGCTAA
AGGAGTTCAATTCCCTATCCACTTGGACATGACAGTTGACCAAGCTGCTAAAAAGGGTGTCCAAGAGGCAAACTCTATGA
AGCAATCTATTGAGGCAGCTTTAGGTGCAGAAAATGTTGTAATTGATATTCAACAACTCACTACTGAAGATTATGACAAT
ACAAGCTATTTGGCTCAGACAGCAGCTCAGAAGGATTATGATCTTTACAACGGTGGTTGGGGTCCTGATTACCAAGATCC
TTCAACCTATCTTGATGTCTTTAATGTTAATTCTGGTGGTCTGATGCAAAATCTAGGTATAGAGCCAGGTGAAGCCAATG
ACAAGGTCAAGGCTGTTGGACTAGATGTCTACACTCAAATGTTGGAAGAAGCCAATAAGGAACAAGATCTTGCAAAACGC
TATGAAAAGTATGCTGAGATCCAAGCGTGGTTGGTAGATAGCGCTTTAGCAATTCCAAATGTTTCTAAGGGTGGAACACC
AGTATTGAGAAAAACTGTTCCTTTCTCAGAACCATATTCATTAGCTGGTAATAAAGGTATTGAATCATATAAATACCTCA
AAGTACAAGATAAGACAGTCACAAAAGATGAATATGAAAAAGCCAAAGAAAAATGGTTGAAAGAAAAAGAAGAATCCAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACACGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

57.339

100

0.575
  amiA3 Streptococcus thermophilus LMG 18311

56.641

100

0.569
  amiA3 Streptococcus thermophilus LMD-9

56.183

100

0.564

Multiple sequence alignment