Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7W_RS06625 Genome accession   NZ_OZ217346
Coordinates   1363067..1365034 (-) Length   655 a.a.
NCBI ID   WP_084930114.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1358067..1370034
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS06590 (SMID22_13530) - 1358704..1358898 (-) 195 WP_001081601.1 DUF3272 domain-containing protein -
  ACLV7W_RS06595 (SMID22_13540) dnaX 1358926..1360581 (-) 1656 WP_411865667.1 DNA polymerase III subunit gamma/tau -
  ACLV7W_RS06600 (SMID22_13550) - 1360581..1361078 (-) 498 WP_084930115.1 GAF domain-containing protein -
  ACLV7W_RS06605 (SMID22_13560) rpsA 1361164..1362366 (-) 1203 WP_001001631.1 30S ribosomal protein S1 -
  ACLV7W_RS06620 (SMID22_13590) - 1362739..1362969 (-) 231 WP_000037113.1 DUF2969 domain-containing protein -
  ACLV7W_RS06625 (SMID22_13600) amiA3 1363067..1365034 (-) 1968 WP_084930114.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7W_RS06630 (SMID22_13610) - 1365057..1366079 (-) 1023 WP_084930113.1 branched-chain amino acid aminotransferase -
  ACLV7W_RS06635 (SMID22_13620) parC 1366214..1368685 (-) 2472 WP_261077907.1 DNA topoisomerase IV subunit A -
  ACLV7W_RS06640 (SMID22_13630) - 1369027..1369845 (-) 819 WP_025171149.1 aminoglycoside 6-adenylyltransferase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72674.26 Da        Isoelectric Point: 5.1322

>NTDB_id=1170450 ACLV7W_RS06625 WP_084930114.1 1363067..1365034(-) (amiA3) [Streptococcus mitis isolate S. mitis D22]
MKSKKWLLTAGVVLSTTALLAACGKADKEADAPTTFSYVYAVDPASLDYSVATRTSTTDVIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKAAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLDDADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1170450 ACLV7W_RS06625 WP_084930114.1 1363067..1365034(-) (amiA3) [Streptococcus mitis isolate S. mitis D22]
ATGAAATCGAAAAAGTGGCTTTTAACAGCAGGAGTGGTCCTGAGCACAACAGCTCTATTAGCGGCTTGTGGAAAAGCTGA
TAAAGAAGCAGATGCACCGACAACATTTTCATATGTCTATGCAGTAGATCCTGCGTCTTTGGACTATAGTGTAGCGACTC
GTACATCTACAACAGATGTCATCGGGAATGTGGTTGATGGATTGATGGAAAATGACCAATACGGAAATGTTATTCCTTCC
TTAGCTGAAGATTGGTCTGTCTCAAAAGATGGTTTGACTTATACCTATAAACTTCGTAAAGGAGTTAAATGGTACACATC
AGAAGGCGAAGAATATGCAGAAGTAACAGCCCATGACTTTGTGACAGGACTAAAACACGTAGCTGACGGAAAGTCAGACG
GTGTCTCTCTCATCCAAAATTCAATCAAGGGCTTGGATGCCTACATGACTGGTGAGACCAATGATTTCTCTACAGTTGGT
GTTAAGGCCTTGGACGATTATACAGTTGAATATACCCTAAATAAACCAGAAAGTTTCTGGAACTCTAAAGTCACAACAGC
AACGATGTTGCCTGTAAATGAAGAGTTTTTGAAGGCATCAGGTAAAGATTATGGAGCAGTTACTCCAGCAGGGATTCTTT
ACAATGGTCCTTATATCTTGAAGACCTTGACATCTAAATCGTTAATCGAATACGAGAAAAATCCAAACTACTGGGATAAA
GAAAAGGTAAAAATCGAGAAAATCAAATTGACCTACTACGATGGTTCTGATCAGGAATCGTTGATTCGTAGCTTCTCTTC
AGGTGCCTATACGACAGCCCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCAACTTTGGAACAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAATCGTCAGTCATATAATAAAACTGCGAAAACA
AGTGAAGAGCAAAAGACTTCTACTAAAGAAGCTATGCTTAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
CCATTCTTATGCTGCCCAGCTAAATGGTGAAGACGGTGCGGATAAGATTATTCGTAACAGCCTTGTTCCTGACAACTTTG
TACAAGCAGGTGGGAAAAACTTTGGTCAAATCGCTCAAGCAGAGTTGGTGAACTATGGTGACCAGTGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAACCCTGATAAGGCTAAAGCTGCGTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACTTTCCCAATTCACTTGGATGTCCCAGTTGAACAAACAGACACCATCGCCGTTCAACAAAGTAACTCTT
TCAAACAGTCAATTGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGATGTTCTTCAAATGACTGATAATGAAAAGGAA
ACAATCACTTCACAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGCTATCAAGA
CCCAGCATCTTACTTGAATATCATGGATCCTAAATCAGGTTCTGCTATGAAACACCTTGGTATTACTAAAGGGAAAGATA
AGGATGTTGTAGCTAAACTTGGTTTGGACCAATATAAGAAATTATTGGATGATGCCGATTCAGAAACTACGAATCTTGAA
GAGCGCTATGAAAAATATGCTAAGGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCGACAGCCTCATCTGGCGG
TTCTCCAGTTGTAAGTAATGTAGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAGGGTGACCCATATATCTTTA
AAGGAATGAAATTGCAAAAAGATATCGTTACGACAAAAGAATATGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTG
GAATCAAATGGTAAGTACCAAAAAGAACTAGAAAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

53.03

100

0.534
  amiA Streptococcus salivarius strain HSISS4

52.584

100

0.528
  amiA3 Streptococcus thermophilus LMG 18311

52.424

100

0.528

Multiple sequence alignment