Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7W_RS01545 Genome accession   NZ_OZ217346
Coordinates   315034..317001 (+) Length   655 a.a.
NCBI ID   WP_411865307.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis D22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 310034..322001
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7W_RS01525 (SMID22_03080) mraY 310491..311471 (+) 981 WP_411865304.1 phospho-N-acetylmuramoyl-pentapeptide- transferase -
  ACLV7W_RS01530 - 311908..313259 (+) 1352 WP_411865305.1 IS3 family transposase -
  ACLV7W_RS01535 (SMID22_03110) - 313302..314804 (-) 1503 WP_411865306.1 IS1182 family transposase -
  ACLV7W_RS01540 - 314765..314946 (+) 182 Protein_282 hypothetical protein -
  ACLV7W_RS01545 (SMID22_03130) amiA 315034..317001 (+) 1968 WP_411865307.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7W_RS01550 (SMID22_03140) - 317403..318848 (+) 1446 WP_125443775.1 LCP family protein -
  ACLV7W_RS01555 (SMID22_03150) - 318855..318959 (+) 105 Protein_285 CpsB/CapC family capsule biosynthesis tyrosine phosphatase -
  ACLV7W_RS01560 (SMID22_03160) glf 319055..320158 (+) 1104 WP_411865308.1 UDP-galactopyranose mutase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72723.39 Da        Isoelectric Point: 5.2137

>NTDB_id=1170421 ACLV7W_RS01545 WP_411865307.1 315034..317001(+) (amiA) [Streptococcus mitis isolate S. mitis D22]
MKSKKWLLGAGVTLSTAILLTACGKSEKNADAPKTFSYVYAVDPSSLDYSVTSKSSTSDVIGNVVDGLLENDKYGNLIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVKAQDFVTGLKHAADGKSDGLSLVEKSIKGLEAYVSGETNDFSTVG
VKAIDDYTVEYTLNKPESFWNSKITTATMLPVNEEFLNATGKDYGAPTPSSILYNGPYFLKSLISKSVIEYEKNPNYWDK
ENVKIDNVKLTFYDGSDQESLIRSFTQGAYTTARLFPASSNFESTKKEYGDKIVYSPQEATSYYLTVNVNRQSYNKTAKT
DESQKTSTKEALLNKNFRQALNFAFNRHAYTAQLNGEEGADKIIRNSLVPDNYVQVAGKTFGQLAQDELLKYGEQWKDVT
LTDGKDTIYNPTKAKSTFEKAKTELQSKGVSFPIHLDVPVEQTDVVAVQQTNSLKQSIEETLGTENVIIDVLQMTDNEKE
SITSQAKVPTQKDYDLNGTGWGPDYQDPATYLNILDAKKGSALKHLGITKGKDPEVMAKVGLDEYKKLLDDAASETSNLD
KRYEKYAKAQAWVTDSSLLIPVASSGGSPMVSRTVPFTKAYSQVGIKGDPFIFKGMQLQNDIVTTNEYEAALKKWQKEKL
ESNAQYQKDLEKHVK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1170421 ACLV7W_RS01545 WP_411865307.1 315034..317001(+) (amiA) [Streptococcus mitis isolate S. mitis D22]
ATGAAATCGAAAAAGTGGCTCTTAGGAGCAGGAGTGACCTTGAGTACAGCCATTCTTTTAACAGCTTGTGGGAAAAGTGA
AAAGAATGCAGATGCTCCCAAAACATTCTCTTATGTTTATGCTGTTGATCCATCATCCTTGGATTATAGCGTTACAAGTA
AAAGTTCAACTTCTGACGTAATAGGTAATGTCGTCGACGGTCTTTTAGAAAATGATAAATATGGGAATCTCATTCCTTCT
CTAGCAGAGGATTGGTCAGTTTCTAAAGATGGCTTGACTTATACTTACAAACTACGTAAAGGTGTGAAGTGGTACACTTC
AGAAGGAGAAGAGTATGCAGAAGTTAAGGCTCAGGATTTTGTCACTGGATTAAAGCATGCAGCAGACGGAAAGTCCGATG
GTCTTTCTTTGGTTGAGAAATCTATCAAAGGATTGGAGGCTTATGTTAGTGGTGAGACAAACGATTTCTCAACTGTAGGT
GTGAAAGCTATTGATGATTATACAGTAGAATATACGCTTAATAAACCGGAAAGTTTTTGGAATTCAAAAATAACCACTGC
AACGATGCTTCCAGTTAATGAAGAATTTTTGAATGCAACAGGTAAGGATTACGGAGCGCCAACTCCATCAAGTATTCTTT
ACAATGGTCCATATTTTTTGAAGTCCTTGATTTCTAAATCTGTGATTGAATATGAAAAAAATCCTAACTATTGGGATAAG
GAAAATGTCAAAATTGATAATGTAAAATTAACATTCTATGATGGATCAGACCAAGAATCCTTAATTCGTAGCTTTACACA
AGGTGCCTATACAACTGCTCGTCTCTTTCCAGCAAGCTCAAACTTTGAATCAACTAAAAAGGAATACGGTGATAAGATTG
TCTATAGTCCACAAGAGGCAACAAGTTATTATCTTACCGTTAACGTAAATCGTCAATCCTATAATAAAACAGCTAAAACA
GATGAGTCACAAAAAACATCAACAAAAGAAGCTCTTCTCAATAAGAACTTCCGTCAGGCTCTTAATTTTGCATTTAATCG
CCACGCCTATACAGCTCAATTAAATGGTGAAGAAGGTGCGGATAAGATTATTCGTAATAGTCTAGTGCCAGATAACTATG
TTCAAGTAGCTGGGAAGACCTTCGGACAGCTGGCTCAGGATGAACTGCTGAAATATGGAGAGCAATGGAAAGATGTGACT
CTCACAGATGGCAAAGATACAATTTACAATCCAACAAAGGCCAAGTCTACATTTGAAAAAGCGAAAACAGAATTGCAATC
TAAGGGAGTAAGTTTCCCGATTCATTTGGATGTACCAGTAGAACAGACAGATGTAGTTGCAGTTCAACAGACAAATTCAT
TAAAACAATCGATTGAAGAAACATTGGGAACTGAGAATGTAATTATAGATGTTCTTCAAATGACGGATAATGAGAAGGAA
AGTATTACTTCTCAAGCTAAAGTTCCAACCCAAAAAGATTATGATTTGAACGGAACTGGTTGGGGACCAGATTATCAAGA
TCCAGCAACCTATCTCAATATTTTAGATGCTAAGAAGGGTTCTGCCTTGAAACATCTAGGTATAACAAAGGGCAAGGATC
CTGAAGTCATGGCGAAAGTTGGATTGGATGAATACAAGAAGCTTTTGGATGATGCTGCATCTGAGACAAGTAATCTTGAT
AAACGATACGAAAAGTATGCTAAAGCACAGGCTTGGGTTACTGATAGTTCACTTCTTATTCCAGTTGCTTCTTCAGGTGG
CTCTCCTATGGTTAGTCGTACTGTGCCATTCACCAAAGCTTATTCACAGGTCGGCATTAAGGGGGATCCATTTATTTTCA
AAGGTATGCAACTTCAAAATGATATCGTGACAACTAACGAGTATGAGGCAGCTCTTAAAAAGTGGCAAAAGGAAAAACTC
GAATCTAATGCTCAGTATCAAAAGGATTTAGAAAAACACGTAAAATGA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

53.799

100

0.54
  amiA3 Streptococcus thermophilus LMD-9

53.263

100

0.536
  amiA3 Streptococcus thermophilus LMG 18311

52.807

100

0.531

Multiple sequence alignment