Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA3   Type   Regulator
Locus tag   ACLV7D_RS06835 Genome accession   NZ_OZ217345
Coordinates   1394391..1396358 (-) Length   655 a.a.
NCBI ID   WP_000837408.1    Uniprot ID   F9HCK4
Organism   Streptococcus mitis isolate S. mitis F22     
Function   binding to XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1389391..1401358
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS06800 (SMIF22_13400) - 1390027..1390221 (-) 195 WP_112443546.1 DUF3272 domain-containing protein -
  ACLV7D_RS06805 (SMIF22_13410) dnaX 1390249..1391904 (-) 1656 WP_218764175.1 DNA polymerase III subunit gamma/tau -
  ACLV7D_RS06810 (SMIF22_13420) - 1391904..1392401 (-) 498 WP_218764174.1 GAF domain-containing protein -
  ACLV7D_RS06815 (SMIF22_13430) rpsA 1392487..1393689 (-) 1203 WP_001001630.1 30S ribosomal protein S1 -
  ACLV7D_RS06830 (SMIF22_13460) - 1394062..1394292 (-) 231 WP_000037110.1 DUF2969 domain-containing protein -
  ACLV7D_RS06835 (SMIF22_13470) amiA3 1394391..1396358 (-) 1968 WP_000837408.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS06840 (SMIF22_13480) - 1396381..1397403 (-) 1023 WP_218764173.1 branched-chain amino acid aminotransferase -
  ACLV7D_RS06845 (SMIF22_13490) parC 1397538..1400009 (-) 2472 WP_218764172.1 DNA topoisomerase IV subunit A -
  ACLV7D_RS06850 (SMIF22_13500) - 1400364..1400924 (-) 561 WP_218764171.1 GTP pyrophosphokinase -

Sequence

Protein


Download         Length: 655 a.a.        Molecular weight: 72716.34 Da        Isoelectric Point: 5.1322

>NTDB_id=1170377 ACLV7D_RS06835 WP_000837408.1 1394391..1396358(-) (amiA3) [Streptococcus mitis isolate S. mitis F22]
MKSKKWLLTAGVVLSTTALLVACGKADKEADAPTTFSYVYAVDPASLDYSIATRTSTTDVIGNVVDGLMENDQYGNVIPS
LAEDWSVSKDGLTYTYKLRKGVKWYTSEGEEYAEVTAHDFVTGLKHVADGKSDGVSLIQNSIKGLDAYMTGETNDFSTVG
VKALDDYTVEYTLNKPESFWNSKVTTATMLPVNEEFLKASGKDYGAVTPAGILYNGPYILKTLTSKSLIEYEKNPNYWDK
EKVKIEKIKLTYYDGSDQESLIRSFSSGAYTTARLFPSSSNFASTLEQYGDKITYSPQDSSSYYFTFNVNRQSYNKTAKT
SEEQKTSTKEAMLNKDFRQAINFAFNRHSYAAQLNGEDGADKIIRNSLVPDNFVQAGGKNFGQIAQAELVNYGDQWKGVE
LVDGKDSIYNPDKAKAAFEKAKKDLESKGVTFPIHLDVPVEQTDTIAVQQSNSFKQSIESTLGAENVVIDVLQMTDNEKE
TITSQARVPSQKDYDLNSTGWAPSYQDPASYLNIMDPKSGSAMKHLGITKGKDKDVVAKLGLDQYKKLLDDADSETTNLE
ERYEKYAKAQAWLTDSSLLMPTASSGGSPVVSNVVPFSKPYSQVGIKGDPYIFKGMKLQKDIVTTKEYEEALKKWQKEKL
ESNGKYQKELEKHIK

Nucleotide


Download         Length: 1968 bp        

>NTDB_id=1170377 ACLV7D_RS06835 WP_000837408.1 1394391..1396358(-) (amiA3) [Streptococcus mitis isolate S. mitis F22]
ATGAAATCGAAAAAGTGGCTCTTAACAGCAGGAGTGGTCCTGAGTACAACAGCTCTTTTAGTGGCTTGTGGAAAAGCTGA
TAAAGAAGCAGATGCACCGACAACATTTTCATATGTCTATGCAGTAGATCCAGCATCTTTGGACTATAGTATAGCGACTC
GTACATCTACAACAGATGTCATCGGGAACGTGGTTGATGGCTTGATGGAAAACGACCAGTACGGAAATGTTATTCCTTCC
TTGGCTGAGGATTGGTCTGTGTCAAAAGATGGGTTGACTTATACCTACAAACTTCGTAAAGGAGTTAAATGGTACACTTC
TGAAGGTGAAGAATATGCAGAAGTAACAGCCCATGACTTTGTAACAGGATTGAAACACGTAGCTGACGGTAAGTCAGACG
GCGTCTCTCTCATCCAAAATTCAATTAAGGGCTTGGATGCCTACATGACTGGTGAGACCAATGATTTCTCTACAGTTGGT
GTTAAGGCCTTGGACGATTATACAGTCGAATATACCCTAAACAAACCAGAAAGTTTTTGGAACTCTAAAGTTACAACAGC
GACAATGTTGCCTGTAAATGAAGAGTTTTTGAAGGCATCAGGTAAAGATTATGGAGCAGTTACTCCAGCAGGAATTCTCT
ACAATGGTCCTTATATCTTGAAGACCTTGACGTCTAAATCGTTAATCGAATACGAGAAAAATCCAAACTACTGGGATAAA
GAAAAGGTAAAAATCGAGAAGATCAAATTGACCTACTACGATGGTTCTGATCAGGAATCGTTGATTCGTAGCTTCTCTTC
AGGTGCTTATACGACAGCCCGTCTCTTCCCAAGTAGCTCAAACTTTGCTTCAACTTTGGAACAATACGGAGATAAAATCA
CTTATAGCCCACAGGACTCAAGTAGTTATTACTTCACCTTTAACGTAAACCGTCAGTCATATAATAAAACTGCGAAAACA
AGTGAAGAACAAAAGACTTCTACAAAAGAAGCGATGCTTAATAAGGACTTCCGTCAGGCTATCAACTTTGCCTTCAACCG
CCATTCTTATGCTGCCCAGCTAAATGGTGAAGACGGTGCGGACAAGATTATTCGTAACAGCCTCGTTCCTGACAACTTTG
TACAAGCAGGTGGTAAAAACTTTGGTCAAATCGCCCAAGCTGAGTTGGTGAACTATGGTGACCAATGGAAAGGTGTTGAG
CTAGTTGACGGTAAGGATTCTATCTACAATCCTGACAAGGCTAAAGCTGCGTTCGAAAAAGCTAAGAAAGACTTGGAATC
TAAAGGGGTAACTTTCCCAATTCACTTGGATGTCCCAGTTGAACAAACCGATACCATCGCCGTTCAACAAAGCAACTCTT
TCAAACAGTCTATCGAATCAACTCTTGGTGCTGAAAATGTTGTCATCGATGTTCTTCAAATGACAGATAATGAAAAGGAA
ACAATCACTTCTCAAGCGCGTGTTCCTTCTCAAAAAGACTATGATTTGAACAGTACAGGATGGGCTCCAAGTTATCAAGA
TCCAGCCTCTTACTTGAATATCATGGATCCTAAATCAGGTTCTGCCATGAAACACCTAGGTATTACTAAAGGGAAAGATA
AGGATGTTGTAGCAAAACTTGGTTTGGACCAGTATAAGAAATTATTGGATGATGCAGATTCAGAAACTACAAATCTTGAA
GAACGCTATGAAAAATATGCCAAGGCTCAAGCTTGGTTGACAGATAGTTCATTATTGATGCCAACAGCCTCATCTGGTGG
TTCTCCAGTTGTAAGTAACGTAGTGCCATTCTCAAAACCATACTCACAAGTTGGTATTAAAGGTGACCCATATATCTTTA
AGGGAATGAAATTGCAAAAAGATATCGTTACAACAAAAGAATATGAAGAAGCACTGAAAAAATGGCAAAAAGAAAAATTG
GAATCAAACGGTAAGTACCAAAAAGAACTAGAGAAACACATTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(77-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F9HCK4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA3 Streptococcus thermophilus LMD-9

52.879

100

0.533
  amiA Streptococcus salivarius strain HSISS4

52.432

100

0.527
  amiA3 Streptococcus thermophilus LMG 18311

52.273

100

0.527

Multiple sequence alignment