Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7D_RS03765 Genome accession   NZ_OZ217345
Coordinates   731358..733334 (+) Length   658 a.a.
NCBI ID   WP_218764249.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 726358..738334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS03745 (SMIF22_07300) - 727302..728180 (+) 879 WP_000301222.1 F0F1 ATP synthase subunit gamma -
  ACLV7D_RS03750 (SMIF22_07310) atpD 728266..729672 (+) 1407 WP_000094360.1 F0F1 ATP synthase subunit beta -
  ACLV7D_RS03755 (SMIF22_07320) - 729683..730102 (+) 420 WP_000068041.1 F0F1 ATP synthase subunit epsilon -
  ACLV7D_RS03760 (SMIF22_07330) - 730147..731160 (-) 1014 WP_164226884.1 lactonase family protein -
  ACLV7D_RS03765 (SMIF22_07340) amiA 731358..733334 (+) 1977 WP_218764249.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS03770 (SMIF22_07350) - 733558..734724 (+) 1167 WP_218764250.1 AI-2E family transporter -
  ACLV7D_RS03775 (SMIF22_07360) - 734714..735943 (+) 1230 WP_164226886.1 tetratricopeptide repeat protein -
  ACLV7D_RS03780 (SMIF22_07370) - 736089..736730 (+) 642 WP_000120831.1 amino acid ABC transporter permease -
  ACLV7D_RS03785 (SMIF22_07380) - 736740..737369 (+) 630 WP_164226887.1 amino acid ABC transporter ATP-binding protein -
  ACLV7D_RS03790 (SMIF22_07390) - 737379..738218 (+) 840 WP_164226888.1 amino acid ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 658 a.a.        Molecular weight: 72412.65 Da        Isoelectric Point: 4.9236

>NTDB_id=1170366 ACLV7D_RS03765 WP_218764249.1 731358..733334(+) (amiA) [Streptococcus mitis isolate S. mitis F22]
MKKRVFLAAGVAILSAAMLAACSTGGKDATKPVTYTYVFSTDPTTLDYTVSGTASTKQITGNVIDGLLENDQYGNLIPSV
AEDWTVSKDGLTYTYKIRQGVKWYTNEGEEYGEVKAQDFVTGLKHAADKKSQALYLVQDSVQGLDDYVNGKTTDFSTVGV
KATDDYTVVYTLNHPESFWNSKTTMGVLAPISEDFLASKGEDFGKATDVTSILYNGAYLLKGLTSKSSIEMTKNQNYWDK
QNVFIDDIKLSFFDGQDADSLGRGFDEGHYPAAPLFKNSANYERLKEKYKDNIVYGPQRGGTFYISTNIDRVAYNHTAKT
SDAEKSSTKKALLNKDFRQSLAFAADRTAAVSQVFGDEVAPRKLRTSFTPPTFVQVGEQSFGQVAKAELDKLDDVWKDVS
LDDAQDSLHNVDKAKAKFEVAKKTLQADGVQFPVHLDLPVSSTQTDFIRQAQSYKQSIEEALGSENIVIDIQQVSDDELG
NMTVFATSTNNTDWDINVNSGWSPDYADPSTYLDVFDPTSGPTLLGALGVAPGTDNPAIKAVGLDKFKELITDASGEKID
LQKRYSKYAKAQAWLTDSALVIPVHSDGAQMLITKKVPGSGAGGWVGDKTSEHSYKYQKLQDKIVTSKEMDDFRKKFADE
KAKSNADYQKNLDRHIQE

Nucleotide


Download         Length: 1977 bp        

>NTDB_id=1170366 ACLV7D_RS03765 WP_218764249.1 731358..733334(+) (amiA) [Streptococcus mitis isolate S. mitis F22]
ATGAAAAAACGAGTTTTTCTAGCAGCTGGTGTAGCTATACTCTCGGCGGCTATGCTAGCAGCGTGTTCAACAGGTGGTAA
AGATGCTACTAAACCTGTTACCTATACCTATGTCTTCTCTACAGACCCTACGACTCTGGATTATACAGTTTCTGGAACTG
CTAGCACCAAACAAATTACAGGTAATGTTATTGATGGTCTACTTGAAAATGACCAATATGGGAATCTGATTCCATCAGTT
GCAGAAGATTGGACTGTTTCAAAGGATGGTTTGACCTATACCTATAAAATCCGTCAGGGTGTCAAATGGTATACCAATGA
AGGCGAAGAATATGGTGAAGTCAAAGCTCAGGACTTTGTAACTGGTCTGAAGCACGCAGCTGATAAGAAATCACAGGCTC
TTTATCTGGTTCAAGACTCAGTTCAAGGTTTGGACGATTATGTCAATGGGAAAACAACAGATTTCTCTACTGTTGGTGTA
AAAGCAACAGATGATTATACGGTTGTTTACACTTTGAACCATCCAGAATCTTTCTGGAATTCCAAGACAACAATGGGCGT
TCTTGCCCCAATTAGCGAGGACTTTTTGGCTTCTAAAGGAGAAGACTTTGGGAAGGCGACTGATGTAACAAGCATTCTTT
ATAATGGTGCTTACCTCCTCAAGGGATTGACATCTAAATCTTCCATTGAGATGACCAAAAATCAAAACTATTGGGATAAG
CAAAATGTCTTTATTGATGATATTAAATTGTCTTTCTTTGATGGTCAGGATGCCGATTCTCTTGGACGTGGCTTTGATGA
AGGACATTATCCAGCGGCGCCTCTCTTTAAAAATTCTGCCAACTATGAGCGTCTAAAAGAAAAGTACAAGGATAATATTG
TGTATGGGCCACAAAGAGGCGGAACTTTCTATATCTCAACTAATATCGATCGTGTAGCTTATAACCATACTGCTAAAACA
AGTGATGCGGAAAAATCATCCACTAAAAAGGCTTTGTTGAATAAAGATTTCCGTCAATCCTTGGCTTTCGCTGCAGATCG
TACCGCTGCAGTATCTCAAGTATTTGGGGACGAAGTGGCACCTCGTAAATTACGTACAAGTTTTACCCCTCCAACATTTG
TCCAAGTTGGAGAGCAGTCGTTTGGGCAAGTAGCTAAGGCAGAACTGGATAAGTTAGATGATGTATGGAAAGATGTCAGT
CTTGATGATGCCCAGGATTCACTTCATAATGTAGACAAGGCTAAAGCTAAATTTGAAGTTGCTAAGAAAACACTTCAAGC
CGATGGAGTACAGTTCCCCGTTCATTTAGACCTTCCAGTTTCCTCTACTCAGACAGATTTTATTCGTCAAGCCCAATCTT
ATAAACAATCCATTGAGGAAGCCTTAGGCTCTGAAAATATAGTGATTGACATTCAACAAGTTTCTGATGATGAATTGGGA
AATATGACAGTATTTGCAACATCGACTAACAATACTGATTGGGATATCAATGTAAATAGTGGTTGGAGTCCGGATTATGC
AGACCCATCAACCTATTTAGATGTATTTGATCCAACATCTGGCCCAACTCTTCTAGGAGCACTTGGTGTAGCACCAGGTA
CAGATAATCCGGCAATCAAAGCTGTTGGTTTAGATAAGTTTAAAGAGTTAATTACGGATGCTAGTGGTGAGAAAATAGAT
CTGCAAAAACGTTATTCTAAATATGCTAAAGCACAAGCTTGGTTAACAGATAGTGCCTTGGTTATTCCTGTACACTCAGA
TGGTGCCCAAATGCTAATAACGAAGAAAGTTCCAGGTAGCGGTGCAGGTGGTTGGGTAGGTGATAAGACAAGTGAACACA
GCTACAAGTACCAAAAATTACAAGACAAGATTGTAACGTCTAAAGAAATGGATGACTTCCGTAAGAAATTTGCTGATGAA
AAAGCCAAATCAAATGCTGATTATCAGAAGAACTTAGATCGTCATATTCAAGAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

54.325

100

0.544
  amiA3 Streptococcus thermophilus LMD-9

54.242

100

0.544
  amiA3 Streptococcus thermophilus LMG 18311

53.788

100

0.54

Multiple sequence alignment