Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   ACLV7D_RS03655 Genome accession   NZ_OZ217345
Coordinates   707601..709559 (+) Length   652 a.a.
NCBI ID   WP_218764245.1    Uniprot ID   -
Organism   Streptococcus mitis isolate S. mitis F22     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 702601..714559
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ACLV7D_RS03630 (SMIF22_07070) - 702737..703249 (+) 513 WP_218764241.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  ACLV7D_RS03635 (SMIF22_07080) - 703233..703883 (+) 651 WP_218764242.1 DUF1803 domain-containing protein -
  ACLV7D_RS03640 (SMIF22_07090) - 703983..704174 (+) 192 WP_000051193.1 CsbD family protein -
  ACLV7D_RS03645 (SMIF22_07100) - 704223..705668 (-) 1446 WP_218764243.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  ACLV7D_RS03650 (SMIF22_07110) - 705774..707396 (+) 1623 WP_218764244.1 putative polysaccharide biosynthesis protein -
  ACLV7D_RS03655 (SMIF22_07120) amiA 707601..709559 (+) 1959 WP_218764245.1 peptide ABC transporter substrate-binding protein Regulator
  ACLV7D_RS03660 (SMIF22_07130) - 709872..710327 (+) 456 WP_173218108.1 hypothetical protein -
  ACLV7D_RS03665 (SMIF22_07140) - 710492..711586 (+) 1095 WP_173218106.1 cystathionine gamma-synthase -
  ACLV7D_RS03670 (SMIF22_07150) - 711594..712760 (+) 1167 WP_173262153.1 PatB family C-S lyase -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72689.16 Da        Isoelectric Point: 4.9038

>NTDB_id=1170364 ACLV7D_RS03655 WP_218764245.1 707601..709559(+) (amiA) [Streptococcus mitis isolate S. mitis F22]
MKKSKAKYATLAGVMLSAGILLSACGNSSTGSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWSVSKDGLTYTYKLRKDAKWFTSEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTSDFSTVGV
KALDDQTVQYTLARPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPANILYSGPFLMKAFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALVRNFTDGAYSYARLYPNSSSYEGIKEKYKDDIVYSMQDATSYFLNFNLDRQSYKFTSKTS
DAEKKSTQEAVLNKNFRQAINFAYDRTAYGAQSQGEDGATKILRNLVVPPNFVSIKGKDFGEVVASKMVNYGKEWQGINF
ADAQDPYYNPEKAKAKFAEAKKELEAKGVTFPIHLDKNIELTNKAEIQGINSMKQSIESVLGAENVVIDVHLLSTEDYDS
SGYLAQTAAQKDYDLYNGGWSADYLDPSSYLDIFSVKNGGVLQSLGLEPGEANDKAKAVGLDVYTQMLEEANKEQDIAKR
YEKYAEIQAWLVDSSLAIPNVSLGGTPTLRKIVPFSTPYSLAGNKGVESYKYLKLQDKTVTTDEYAKAREKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=1170364 ACLV7D_RS03655 WP_218764245.1 707601..709559(+) (amiA) [Streptococcus mitis isolate S. mitis F22]
ATGAAAAAGTCTAAGGCCAAGTATGCAACACTTGCAGGTGTCATGTTAAGTGCAGGTATTTTGTTAAGCGCCTGTGGAAA
TTCTAGCACAGGGTCAAAAACCTATAACTATGTTTATTCAAGTGATCCATCTAGTTTGAACTATCTAGCAGAAAACCGTG
CAACAACCAATGATATTGTGACCAATCTGGTAGATGGTCTCATGGAAAATGACCAGTATGGGAACTATGTGCCATCCTTG
GCAGAGGATTGGAGTGTTTCTAAGGACGGTTTAACCTATACCTACAAACTTCGTAAGGATGCTAAGTGGTTTACTTCTGA
GGGAGAAGAATATGCTCCTGTAACTGCTCAGGATTTTGTGACAGGTTTGAAATATGCAGCTGATAAAAAATCAGAAGCCT
TGTATCTAGTGCAGGACTCTGTTGCAGGCTTGGATGACTATATTAACGGGAAAACAAGCGACTTTTCAACTGTCGGAGTC
AAGGCTCTTGATGACCAAACGGTTCAATACACCTTGGCTCGACCAGAACCTTACTGGAACTCAAAAACAACCTCAACCAT
TCTTTTCCCAGTCAATGCAGATTTCTTGAAATCAAAAGGGGATGATTTTGGGAAGGTAGACCCTGCTAATATTTTGTACA
GTGGACCTTTCTTGATGAAAGCTTTTGTTTCAAAATCTGTCATCGAATACAAGAAAAATCCTAACTACTGGGATGCTAAA
AATGTCTTTGTAGATGATGTCAAATTGACCTACTATGATGGTAGTGACCAAGACGCTCTTGTTCGTAACTTTACAGACGG
AGCCTATAGCTACGCTCGTCTCTATCCGAATAGTTCAAGTTATGAAGGAATTAAAGAAAAATACAAAGATGATATCGTCT
ATAGCATGCAAGATGCCACTTCTTACTTCTTAAACTTTAATCTGGATAGACAATCTTATAAATTCACTTCCAAGACAAGT
GATGCTGAAAAGAAATCGACTCAAGAAGCGGTTCTTAATAAAAACTTCCGTCAAGCTATTAATTTTGCCTATGATCGGAC
AGCTTACGGGGCTCAATCTCAAGGAGAAGATGGTGCAACTAAGATTTTGCGTAACTTGGTTGTTCCTCCAAACTTCGTAA
GTATCAAGGGAAAAGACTTTGGTGAAGTAGTGGCTTCTAAGATGGTCAATTATGGTAAGGAATGGCAAGGAATCAACTTC
GCGGATGCCCAAGATCCATACTACAATCCAGAGAAAGCCAAAGCCAAATTTGCAGAAGCTAAGAAAGAATTAGAAGCTAA
GGGGGTAACATTCCCTATCCACTTAGATAAAAATATAGAGTTGACCAATAAGGCTGAAATTCAAGGAATCAATTCCATGA
AGCAATCAATTGAGTCTGTCTTAGGTGCAGAAAATGTTGTGATTGATGTCCACCTACTTTCTACAGAGGACTATGATAGT
TCAGGTTATCTAGCTCAAACAGCTGCGCAAAAAGACTACGATCTCTACAATGGTGGTTGGAGTGCGGACTATCTTGATCC
ATCTAGCTATCTTGATATCTTTAGTGTCAAGAATGGTGGGGTTCTACAAAGTCTTGGACTCGAGCCAGGTGAAGCCAATG
ACAAGGCCAAGGCTGTTGGATTGGATGTCTACACTCAAATGTTGGAAGAAGCTAATAAGGAACAAGATATTGCAAAACGC
TATGAAAAGTATGCTGAAATCCAAGCTTGGTTAGTAGATAGCTCTCTAGCAATTCCAAATGTTTCACTTGGTGGAACACC
AACATTGAGAAAAATCGTTCCTTTCTCAACACCATATTCATTGGCTGGTAATAAAGGGGTTGAATCCTATAAATACCTCA
AATTACAAGATAAGACAGTCACAACAGACGAATATGCAAAAGCCAGAGAAAAATGGTTGAAAGAAAAAGAAGAATCTAAT
AAAAAAGCCCAAGAAGAATTGGCGAAACATGTCAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-517)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.539

100

0.561
  amiA3 Streptococcus thermophilus LMD-9

55.539

100

0.561

Multiple sequence alignment